FMO09381.5prime Sequence
1136 bp (972 high quality bases) assembled on 2010-10-13
> FMO09381.5prime
CAGTCGACATGATAACCCTATTAAAACCAATTCATAAATGGCTCTGCTTC
TGCCTAATTGCAATAATCGTAATTCTCGGCATCAAAACCCAAAATGCAAA
TACTAAGCCCAGAGTTTCAGAAGTCACAGGATCGGATGACACAAATTCCG
ACATTCCTCCTGCTGAAGAAGATCGAAATGTACAGGATGTAGTCCGGCCC
GCATATTTTGTGGAGTCCGCCAAGTGCAAGATCCCGTATGTTGATCCCTT
CGCCTCAGATGCAATGGCCATTTTCCACCCCGAGCATTTTGAGACCTGCT
CAAACGAAACCGCCCTGGTTACTCCGATCTATGACATCAGTCGGCAGCGA
TATGTACTCTTCATCAATGAGTCGTTAGCCTCCATTATTCTCAACTCCAA
TGGGGGGGAGTACAATTGCTATTATCAGGAGATAATGCGGGACCGTAAGC
ACGACAGTTATGATAAGATGGAGCGAAAATACTTCTCTCAGAACTACGAG
GTGCCGCTCCATGTTGAGGGCCTGATCTTGACCTGCCATCGTCTTGGCAA
CGAGTCGGATATTTTGCAGAGCGATGCGTATAACCTCATTCAATACAGGC
CACCACCCAAAGGACTCTCGCTGAAACCGTCCAAGAGGAAGCCAAGTGTC
CTTATGTTCGGCATAGACAGCCTTTCGCGGATCAATTTGCGTAGAACTAT
GCCGAAGGTCTATAAGTTCCTAACGAGGGACGGGTGGTTCGAGCAGCAAG
GATACAATAAGATAGGCGACAACACCTTCCCCAATCTGTTGGCCATTTTG
ACAGGCTACAATCCAGAGTCGGTCATTAAGAATGTGTGCAACTGGCACGA
GGATGGGTGCCTAGATAGGACCCCTTTTATATGGCACTACTTCCGGAATG
TCAGCTATCTCACAGCCTATGCTGAGGATGAGGCAGGCATTATACATTCA
ACTATTGGAAACCGGGTTTCCTGGGCAGCCACGACTTCTACTAAGGCCCT
TGCAGAAGTGCCATTGAATCGGGCCTGACACCTGGAAATGCAGTGACCTG
CCTCGATGAAGTAACTGTATCGGCCGGCGGAATACCGAGACAGTTAGCCT
ACACACTGGTAGAAATTTGCCACGTTTCCTGGATGA
FMO09381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9988-RA | 2274 | CG9988-RA | 12..1145 | 8..1136 | 5120 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28636422..28636881 | 8..467 | 2285 | 99.8 | Plus |
| 3R | 32079331 | 3R | 28636941..28637235 | 467..761 | 1475 | 100 | Plus |
| 3R | 32079331 | 3R | 28637289..28637612 | 760..1081 | 1120 | 95.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:45:49 has no hits.
FMO09381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:37 Download gff for
FMO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9988-RA | 7..1106 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:42 Download gff for
FMO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9988-RA | 8..1107 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:59 Download gff for
FMO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9988-RA | 8..1107 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:59 Download gff for
FMO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28636941..28637235 | 467..761 | 100 | -> | Plus |
| 3R | 28636418..28636880 | 1..466 | 99 | -> | Plus |
| 3R | 28637291..28637632 | 762..1102 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:42 Download gff for
FMO09381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24462140..24462602 | 1..466 | 99 | -> | Plus |
| arm_3R | 24462663..24462957 | 467..761 | 100 | -> | Plus |
| arm_3R | 24463013..24463354 | 762..1102 | 94 | | Plus |
