FMO09383.5prime Sequence
1107 bp (965 high quality bases) assembled on 2010-10-13
> FMO09383.5prime
CAGTCGACATGTTGACCATGTTGTCCGTGAACCAAGATAACGGTCCACAC
CGTGAGATGGCCGTCGATTGTCCGGACACGTTCATCGCACGCAACAAGAC
GCCACCCCGATATCCGCCACCCCGTCCACCACAGCTCAATGGGAATGCGA
AGCCCGTACCGCCGCCACGTGATCATCTGCGGGTGGAGAAGGATGGTCGG
CTGGTCAATTGCTCACCCGCACCACAGCTGCCGGATCGCAGGGCGCCGGG
AAATGCGAGCAGCGGCAGCAGCGGCGCCACAACGCATCCGCTGCAGCATC
AGCAGATCGCCCAGATTGTTGAGCCCACATTGGAGCAGCTGGACAGCATC
AAGAAATACCAGGAGCAACTGCGCCGACGACGCGAGGAGGAGGAGCGCAT
AGCGCAGCAAAATGAATTCCTGCGGAACATTCTTCGTGGCTCCAGGAAGC
TGAAGGCGCTTCAGGATACGGCTACGCCCGGTAAAGCGGTTGCCCAGCAG
CAGCAGCAGGCAACGCTGGCCACCCAGGTGGTTGGCGTGGAGAATGAGGC
ATATCTGCCCGACGAAGACCAGCCGCAGGCGGAACAGATCGATGGCTATG
GCGAACTGATAGCGGCCCTTACCCGCCTGCAAAACCAGCTGAGCAAGAGC
GGACTGAGCACGCTGGCGGGTCGCGTTTCGGCCGCCCACAGTGTCCTGGC
CAGCGCCAGTGTGGCCCATGTCCTGCCGCTCGCACCGCAGTACTGCAGCG
ACGACGTTCCCGCGTCTCTGGTCCACTGCATCACAGTTCCCTCGGATTGC
AGAACGACATTGTGGAGCTGCTAACGCAATCGAATACGGCGGCGGCCATC
GAGCTGGGCAACCTGCTGACCAGCCATGAAATGGAGGGTCTGCTACTGGC
CCACGATCGCATTGCCAATCACCACGGATGGCACGCCCTCGCCAACGCCC
ATCGCCCACTTCGTGCATTTGGAGCGGCGTACGGATCGACACTCAGCAGT
CCGGTGGCTGGAACCTAGAGAAATCTAGGGAATGGTGGGTGCCACCGCCC
GGTGGTTACCTCCCGCCATGTGTCACACGCGAACATGGCCACCTGCCCTC
TGCGGGG
FMO09383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sdt-RF | 4482 | CG32717-RF | 922..1960 | 9..1051 | 4920 | 98.6 | Plus |
| sdt-RH | 4017 | CG32717-RH | 457..1495 | 9..1051 | 4920 | 98.6 | Plus |
| sdt-RP | 6968 | CG32717-RP | 2361..3399 | 9..1051 | 4920 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8235881..8236314 | 594..1029 | 1865 | 97.3 | Plus |
| X | 23542271 | X | 8227866..8228099 | 130..363 | 1170 | 100 | Plus |
| X | 23542271 | X | 8235586..8235821 | 360..595 | 1165 | 99.6 | Plus |
| X | 23542271 | X | 8223955..8224047 | 42..134 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:45:18 has no hits.
FMO09383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:33 Download gff for
FMO09383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RA | 393..523 | 1..133 | 97 | -> | Plus |
| sdt-RA | 1824..2750 | 134..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:28 Download gff for
FMO09383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RP | 2355..3413 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:46 Download gff for
FMO09383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sdt-RP | 2355..3413 | 1..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:46 Download gff for
FMO09383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8223827..8223866 | 1..42 | 92 | -> | Plus |
| X | 8223956..8224047 | 43..134 | 100 | -> | Plus |
| X | 8227871..8228098 | 135..362 | 100 | -> | Plus |
| X | 8235589..8235820 | 363..594 | 99 | -> | Plus |
| X | 8235882..8236348 | 595..1068 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:28 Download gff for
FMO09383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8117860..8117899 | 1..42 | 92 | -> | Plus |
| arm_X | 8117989..8118080 | 43..134 | 100 | -> | Plus |
| arm_X | 8121904..8122131 | 135..362 | 100 | -> | Plus |
| arm_X | 8129622..8129853 | 363..594 | 99 | -> | Plus |
| arm_X | 8129915..8130381 | 595..1068 | 96 | | Plus |
