FMO09384.5prime Sequence
1092 bp (960 high quality bases) assembled on 2010-10-13
> FMO09384.5prime
CAGTCGACATGCACCAGATGACCAACGTTCCCGGCTTCGTAAACCTGTCG
TGCACCTTCCAGGACCAGCGTTCTCTTTACTTTGTGATGACGTACGCGCG
AAAGGGCGACATGTTGCCATACATCAACCGCGTGGGTAGCTTTGACGTGG
CCTGCACGCGCCACTACGCTGCCGAGCTTCTGCTGGCCTGCGAGCACATG
CACCGCCGTAATGTGGTGCACCGCGACCTCAAGCCCGAGAACATCCTGCT
CGACGAGGACATGCACACGCTAATCGCCGACTTCGGTTCCGCCAAGGTGA
TGACAGCCCACGAAAGGGCTCTGGCCACGGAGCACTGTTCGGAGCAGCGG
CGCAGCAACTCCGATGAAGACGATGAAGACAGCGACCGCCTGGAAAACGA
AGACGAAGACTTCTACGATCGCGATTCGGTGTTTTTGGACGACGGCGACG
ACGAACAGCAGCAGGAAGAGATGGACTCCCCACGCCATCGTCAAAGGCGT
TACAACCGTCACCGAAAGGCAAGCTTTGTGGGCACTGCCCAGTACGTTTC
ACCGGAAGTGCTCCAAAATGGACCTATAACCCCGGCGGCGGACCTGTGGG
CACTGGGATGTATAGTTTATCAGATGATCGCCGGCCTACCGCCATTCCGT
GGCAGCAACGATTATGTCATTTTTAAAGAGATTCTTGACTGCGCCGTGGA
CTTCCCGCAAGGCTTTGATAAGGACGCCGAGGACCTGGTGCGCAAGCTGC
TCCGTGTCGATCCGCGAGACCGCCTGGGTGCTCAGACGAGTTTGGATATT
ACGAATCCATTCGGGCGCACCCATTCTTCGCCGGCATTGACTGGCAGACG
CTCCGTCAACAAACCCCTCCCCCCATCTACCCATACTTACCGGGCGTAAG
TCAGATGAGGACTTCATGTCCAGCTATACTGTGCCCCGGGGATTTGGAGC
CTGGCCTTGACGACCGGCAGAATATCCGCGACTGCTTATTGCAGAATAGG
CGTTGGCAGCAGCGTGCCATGCCCGTCAGCGATCGACCGCAAGAACTCTT
TCGACCTGAACGATGGCCAAAAGCTGGCACCGCCTCGTGCTC
FMO09384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdk1-RJ | 4959 | CG1210-RJ | 1265..2335 | 9..1076 | 4995 | 98.2 | Plus |
| Pdk1-RF | 4162 | CG1210-RF | 1070..2140 | 9..1076 | 4995 | 98.2 | Plus |
| Pdk1-RH | 4347 | CG1210-RH | 1255..2325 | 9..1076 | 4995 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 141841..142876 | 9..1042 | 4690 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:45:23 has no hits.
FMO09384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:33 Download gff for
FMO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk61C-RB | 374..1452 | 3..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:30 Download gff for
FMO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RF | 1067..2145 | 3..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:49 Download gff for
FMO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdk1-RH | 1252..2330 | 3..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:49 Download gff for
FMO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 141838..142879 | 3..1044 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:30 Download gff for
FMO09384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 141838..142879 | 3..1044 | 98 | -> | Plus |
