FMO09385.5prime Sequence
1095 bp (883 high quality bases) assembled on 2010-10-13
> FMO09385.5prime
CAGTCGACATGACAATCAAGCCAGTGAGCGCCCCACCGAGCGCGAAACGC
GTGGCTGGAAATGTGGATCCCGATAACAAGGAGGCGCAGGTGGTTGTGGT
GGAGCAGTCGGTGGTCAGCCAGACCCATAACCATGCCCACAACCACCGTA
ACGTCGTCATCGATGGGCAGAGCCCCCAAAGGCGTGGCGAGGTCTACGAC
GAACTGGCACGCACCCATCGCTGCAGCCCACACAAGAGCACACGCTCGAA
GCGTCGCGAACACCACGAAGCGCATGCACACCTTTATAAGCGCGATCGTC
TGGAGCGCGAGAAACTAGTCCATCCGACGGCAGCGGCGGGCAGTGGAGCA
CCTGGTGTATCTGGCAGCAAGTGCAACAGTCCACCGTCGACCTCAACTTC
CGGCAGTAGCAGTCCGTCGGCAGTGGGCCTAAACTCACCCGAACACTTGG
GACTGGGCTGCACCACGGTGCCCACAGCTCAGGTCCAGATGTCTACGTCT
ACGGCGGCCGCCAATTTGCTAAAAACAGTGGAGGAAACCTTTTCCGGTTA
CAATAGCGGCGATGAGCATCATCAGCCCAAAGAGCGATTGATTCCAGTGG
AAGAGTGGCAGCGACGTGATCTGGAGTTCGCCAAATGTATGGAACAGCGC
GGCTACGAACTTAAGCCTGTCGAGGAGGATGGCGCCTGCCTGTTTCGCTC
TATATCCCTTCAAATATACGGCGACGAGGAGATGCACGACGTGATCCGCC
AACACACTATGGATTATATACACGAGAATCGGGAATATTTCGGTCAGTTT
GTCACCGAGGACATCAACAGCTATATACAGCGTAAACGGGCTCGTGATGC
TCATGGCAACCACATTGAGATCCAAGCTAATTTCTGAGATCTACAGCTGT
ACCGTCGAGGTATGCTGCTACCAGTCATATCACCATTCATATTATTTAAC
TTCGGAACAGTCGCAAGGCGGGTTATTCCCCTCGCTTGCGTTTATCCTAT
TCAGCGCGGGATTCACACTACAATTGCTTATTCTGATTCCTTACAACGCC
TCCCGTTTGGCGTTGGGCCTTGTGCTTGGCTGGAATCAAAACCCG
FMO09385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6091-RF | 3179 | CG6091-RF | 530..1590 | 7..1084 | 4785 | 97.3 | Plus |
| CG6091-RE | 3276 | CG6091-RE | 627..1687 | 7..1084 | 4785 | 97.3 | Plus |
| CG6091-RG | 2890 | CG6091-RG | 530..1590 | 7..1084 | 4785 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11607652..11608185 | 770..237 | 2655 | 99.8 | Minus |
| 3L | 28110227 | 3L | 11608676..11608839 | 170..7 | 820 | 100 | Minus |
| 3L | 28110227 | 3L | 11607436..11607591 | 927..771 | 690 | 97.5 | Minus |
| 3L | 28110227 | 3L | 11608537..11608606 | 238..169 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:46:05 has no hits.
FMO09385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:39 Download gff for
FMO09385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RF | 500..1535 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:49 Download gff for
FMO09385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RG | 525..1560 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:05 Download gff for
FMO09385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6091-RG | 525..1560 | 1..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:05 Download gff for
FMO09385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11607435..11607591 | 771..928 | 96 | <- | Minus |
| 3L | 11607652..11608183 | 239..770 | 99 | <- | Minus |
| 3L | 11608537..11608604 | 171..238 | 100 | <- | Minus |
| 3L | 11608676..11608844 | 1..170 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:49 Download gff for
FMO09385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11600535..11600691 | 771..928 | 96 | <- | Minus |
| arm_3L | 11600752..11601283 | 239..770 | 99 | <- | Minus |
| arm_3L | 11601637..11601704 | 171..238 | 100 | <- | Minus |
| arm_3L | 11601776..11601944 | 1..170 | 98 | | Minus |
