FMO09387.5prime Sequence
1145 bp (1031 high quality bases) assembled on 2010-10-13
> FMO09387.5prime
CAGTCGACATGGGCTGCGTCTTTGAAGCGGCCAAAGAGCAGCCCCACAAA
CCGAGAAGCAGGCAACTGAGGCGCAACCAATGCCGTGGAAAAGCGGAAAA
AGCAGCAGCGGGGACCAGAGGCAAGGTCGCTGTCAGAGGAAACAACGACA
AGCCAGCTGAGGACATCAAAATCAAGGATAACTATCAACAAAACCATAAA
ACGCAAACCGAAACACAAACAGAAGTAGCAGCAGTAGTAGCAATAGCAAC
AGACGCAGGAGCAGAAACAGAAACTGAAACAGAGGCTGAGGCCCAAAAAG
AGCCAGCAACCGGGCCCGAACATCTGAAGGCGGCGGCTCAAGTGCTTTTA
ACGATACGGCAGGCACGTCAGGAGAACAACAAGCACAGTAGTAGTCAAGT
GGCTGAAACGCACAAGGACGAAGGCGAGGACGCGTTGTCGCGGCAAGGAT
CCATTGTCGATACGGCGGCGGGCAGAATCGGAATCGATATTGCGGCAACA
ACGATTCAAGTCGCCGAGCGGCATGAGGATGGGCAGCATTGGCAGCAACA
CAATGTCCGCCGGCGGAGGCGCCAGCCAGATCCTGCAGCGCATCCTGCAA
GCATCACCAAACTTTCGGCAATATCCCTGCATTTTCACGCCCTCGCCGCC
CTAGCGAAAACGCTCCAAAAGCACGAGGACCTGAGTCCTGTCCAGGATCG
CCAGCCCCTAGCGTACCGGGCGTGGCAAGAACATCCGTATGCCGAGACCC
AAATGCCCGCCACCATGTCAGCGGCCATCATTGCGAATGTCGGCGCTACT
GCAGCGGCCACCTCGGCAGCCGCCTTCCAGTATCTCGGCCAGCACTACAA
GCACTACAGCCAGTCGATCAGCTTCTACGCCGCCTCCAGTGTGCTCCTGA
TGCTTTGTTATCTGACCACCGCGTCCACGGCAGCTGCCACGCAGTCGGAG
ACGGGTGCCCTCGACAGCATCCCATTCATGGCATCGATTGGTCGAAATTT
GATGGAGTCCAGTTCGGATAGGAATAATTAGATTTACTGCTGAGAAAGAA
GCGCCTACGAAAAACGATACTGCCGCCCTGTAATGATGAAGACTTTGGCT
GTGGCTTGCCATCGCCCCCGAATGGCACCTATCAAATGAAGGGGA
FMO09387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pHCl-RN | 6629 | CG44099-RN | 517..1628 | 7..1117 | 5265 | 98.7 | Plus |
| pHCl-RG | 3687 | CG44099-RG | 517..1628 | 7..1117 | 5265 | 98.7 | Plus |
| pHCl-RF | 3293 | CG44099-RF | 517..1628 | 7..1117 | 5265 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15869840..15870799 | 966..7 | 4785 | 99.9 | Minus |
Blast to na_te.dros performed 2014-11-26 14:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8046..8084 | 220..258 | 114 | 76.9 | Plus |
FMO09387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:41 Download gff for
FMO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pHCl-RF | 513..1647 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:53 Download gff for
FMO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pHCl-RF | 513..1647 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:09 Download gff for
FMO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pHCl-RF | 513..1647 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:09 Download gff for
FMO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15869248..15869268 | 976..996 | 100 | <- | Minus |
| 3L | 15869830..15870803 | 1..975 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:53 Download gff for
FMO09387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15862348..15862368 | 976..996 | 100 | <- | Minus |
| arm_3L | 15862930..15863903 | 1..975 | 99 | | Minus |
