FMO09391.5prime Sequence
1123 bp (972 high quality bases) assembled on 2010-10-13
> FMO09391.5prime
CAGTCGACATGCCGGGCGTGGTCTTCCTAATCGTTGTGCCTACGGCGAAT
TTTGAACGTGAGCTGATTTACGGCACCTCAAATAATGCCCTGCTGGAGAC
GTCGTCTGCCGTTGGCATTGGCAGCCATCCGGGACACCTCACTGGTGGCC
ATGGTGGCCATACTGCGGTCACTGCAGCCGCCAATGGTGGTGGCAACAAT
AATCTGAACATCAATCTTCCGGAGAATAACAACGCAATACTACGACTCGA
AGTTGAATTACGTGACAAGAATGTGCCCAAGTATCGTCGTGGCGGAGGCG
GTGGGCGTGGCGGTGGCCCAGGCATCGGACAAGTGGGCGGCGGACAAGTA
GGCAAGCGAACCGCAGGAGGCGCAGGTGGTGCAGGAGGAACGGGCACCGG
AGTCCAGATTTTGCCAGCTGACACCTCAACGGTGGTGTGTGCTCCCATGG
ACAAACGTAATTTAGTGGTGCCGCTCGAAAAGGTACTGGAGGAGCTGCTT
GTCAAGCTGGAAATTGAGCACGTTACTTGGACGACCAGCAAGAAGGGATA
TTTCCATCACGTCGTTTTTCCGCTGCAGGCGGGATCCCCCTGCGAGACGA
CGCTGCACTGCCTCACGGAACTGGGCATTGGCACTAAATTGAATTCCAGT
GTCAGTGTGCTGCCGTGCAGCGTTAGTTATGATGCCATCACAGATGCGGC
CAACATGCGAGATGACTACAGCGAGGAAGCCGAGGATGCCTCGAAATGGA
ACAATTTTGTGGAATCAATTAAGTCGAAATTAACAGTCAAACAGGTGGTG
GATGGAGTTCGAGCCGGAGGATCCTTGTCCTTTGACTACTTGCTGCTAAT
CGTTACAGCCGACTCTTTGGCCGCCCTGGGCCTCGTGGAGAATAATGCCC
CAATATAGTGGCTGCCATGTTAGTTTCGCCCGCTTATGGGTCCCGTAATG
GTCGATAAACATTCGGCGGCAATTTTCTCCGACAAGAACTAATGGAGAGT
TGGCTTCCTTGGCCTCGGGATTGGGGCATGTTATCTTCGCTGCTATTTGC
TCATCTCGCTATCCTGGGCCACCACCCGAAATGCTTGGGGCGAAACATTC
CAACTGGGTCCCCGGAAGAAATG
FMO09391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34109-RC | 2551 | CG34109-RC | 44..1126 | 9..1091 | 4930 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10103645..10104058 | 72..485 | 2055 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10104790..10104964 | 481..655 | 875 | 100 | Plus |
| 2L | 23513712 | 2L | 10107343..10107487 | 718..862 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 10107756..10107886 | 863..995 | 360 | 94.8 | Plus |
| 2L | 23513712 | 2L | 10106161..10106229 | 653..721 | 345 | 100 | Plus |
| 2L | 23513712 | 2L | 10101188..10101252 | 9..73 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:46:20 has no hits.
FMO09391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:42 Download gff for
FMO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34109-RC | 40..1088 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:58 Download gff for
FMO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34109-RC | 40..1088 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:12 Download gff for
FMO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34109-RC | 40..1088 | 1..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:12 Download gff for
FMO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10104792..10104964 | 483..655 | 100 | -> | Plus |
| 2L | 10106164..10106229 | 656..721 | 100 | -> | Plus |
| 2L | 10107347..10107487 | 722..862 | 100 | -> | Plus |
| 2L | 10107756..10107889 | 863..997 | 93 | -> | Plus |
| 2L | 10101184..10101251 | 1..72 | 94 | -> | Plus |
| 2L | 10103646..10104055 | 73..482 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:58 Download gff for
FMO09391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10101184..10101251 | 1..72 | 94 | -> | Plus |
| arm_2L | 10103646..10104055 | 73..482 | 99 | -> | Plus |
| arm_2L | 10104792..10104964 | 483..655 | 100 | -> | Plus |
| arm_2L | 10106164..10106229 | 656..721 | 100 | -> | Plus |
| arm_2L | 10107347..10107487 | 722..862 | 100 | -> | Plus |
| arm_2L | 10107756..10107889 | 863..997 | 93 | -> | Plus |
