FMO09392.5prime Sequence
1100 bp (968 high quality bases) assembled on 2010-10-13
> FMO09392.5prime
CAGTCGACATGTTTATCATCCTATCAATCTGCCTAATTTCACTTGGTCCT
CCAATAGGCCTTTGTGAAATTACAAATTCTGCAATGTCCATAGCTGGAAT
GAAAGAGCTTGTGGACTTGGAGGGTTTTTTCATCAGCGAAATGGAGAGCT
ACACTGCAGCCCTGAAGAATAAAATCGATCTGATGGAGAGTTTGCTACAA
GAAGTACAATCCAAACGAGAGATTTCCCGAAGGAACCCAGAAGAGTTCGT
TGCTCATCCCCTCAATGCATTTTCCCTCATTCGACGGCTGCACGAGGATT
GGACCCAAGCCGAGCTATTGATGTTGAATCAAGTTGGCTTGGAACACCTT
CAAGCTATTGAAACTGGCTTGGAGGAAGCCCAGCCAAGCGATAATGATCT
TAACGATGCCATCGGCGGAATAATCTCACTGCATCTATTCTACAATCTAC
AGCCAAGTGACATAGCCAATGGATTACTGATGGGACAGCAATACAATGCC
AGCTTGACCACACTTAACTGTCAGGCTTTGGCCAACGCGTGTATGAATTT
TAATTACGATAAGTATGCCTTAAATTGGTTCAAAGCTGCTGTAGATCACT
ACAATGACGATCGAGATGGACAGGTCTATAGGGAGGTATTTGATTTTAGG
CTGCCTGATTTATACATAAATTACACCTCAGTTTTGGTAACTAAAGGTTT
TCGCAAAGCCGCATGGAAAGTCCTGCAGGACGTCGCTGATTTAGACGCTA
CTCTCTGGTTGCTTCGCAAAGATATTTATGAGGTAGGAAAAATCGATGTT
CCTGATCCCACGTTTATCATAACACCATGGTTCGATGTTACTGGTTGTCT
AAGAGTTGGGCAGACCAGCCAACATCTCAGCTTTCACTACGAAAAGAACA
CGTCTGAATTCCTTAGGATTGCTCCGCTTAAGGTGAAACGCTTAGTTTGA
AGCCGCATTATTGTTTTTGTATTCATGATGTGATCTATGACAGCGAGATC
TTCAAAAGGTCAAAAAATATTTCACTGCCTTCACTAAAGAGTCCTTGGCG
AATTCTTCTATGCTATTGACTATACTAAGGTTCGGCAATTCCGAGATCAC
FMO09392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18234-RC | 1575 | CG18234-RC | 15..1091 | 8..1088 | 5090 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18603671..18603978 | 189..496 | 1510 | 99.4 | Plus |
| 3L | 28110227 | 3L | 18604030..18604236 | 492..698 | 1020 | 99.5 | Plus |
| 3L | 28110227 | 3L | 18603439..18603625 | 8..194 | 920 | 99.5 | Plus |
| 3L | 28110227 | 3L | 18604463..18604719 | 812..1074 | 895 | 95.5 | Plus |
| 3L | 28110227 | 3L | 18604287..18604406 | 693..812 | 600 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rover | 7318 | rover ROVER 7318bp | 3608..3644 | 341..377 | 113 | 78.4 | Plus |
FMO09392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:43 Download gff for
FMO09392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18234-RC | 8..1091 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:43:00 Download gff for
FMO09392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18234-RC | 8..1091 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:14 Download gff for
FMO09392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18234-RC | 8..1091 | 1..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:14 Download gff for
FMO09392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18603432..18603621 | 1..190 | 97 | -> | Plus |
| 3L | 18603673..18603978 | 191..496 | 99 | -> | Plus |
| 3L | 18604035..18604234 | 497..696 | 100 | -> | Plus |
| 3L | 18604291..18604406 | 697..812 | 100 | -> | Plus |
| 3L | 18604464..18604735 | 813..1088 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:43:00 Download gff for
FMO09392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18596532..18596721 | 1..190 | 97 | -> | Plus |
| arm_3L | 18596773..18597078 | 191..496 | 99 | -> | Plus |
| arm_3L | 18597135..18597334 | 497..696 | 100 | -> | Plus |
| arm_3L | 18597391..18597506 | 697..812 | 100 | -> | Plus |
| arm_3L | 18597564..18597835 | 813..1088 | 94 | | Plus |
