FMO09394.5prime Sequence
1145 bp (1006 high quality bases) assembled on 2010-10-13
> FMO09394.5prime
CAGTCGACATGCACCGAATACCATTGTATATGGGGTCGGAGCCTCGCCCC
GAGGCCTCTGAATATATCACGATGTCCGAGGCCATGTGTCCACGTAACCT
GATAGAATGCGAGCTGTTCTTGAAGATTCTGCGCAAAACAACCGACAAAG
TTTTTCTCGATTTTTCTGAAGTTGCTGAAGGTTGCCTTAACATTTCCAAG
AAGTGTATGAATATGAAAAGTCCTACAGTGTTGAAGATGACTTTGCAGAG
TCTGGACGAAATTATATGCCGCGCACCCAGCGCCTCCCCTACATGCGTGG
ATGCGATTATGGCCAGAAGTGTGCTCTACATAAAAAATAACCAGAATACG
ACCGCATGCAATGATTTACTATATTACGAGTCTTTGGATCCAGCTCTCAA
GACAGCGGAGGGAACGATAATCTCGCAGATTCTTCTCTGTATATGCCTTT
TTGTGAATCGGGAGTATGAAGCATCGAAAGATAAACTTTCAGTTGTAAAA
GGCCTCATTGAAGATGGGACACTAGCCGATCGAAGTGAAGTTAGTCCTTT
TCTAGCTCTTATAGAGCAACATGAAGAGAGAATCAACCAAGCTAGAATAA
ATGTTGAGTTTTGCAAGAAAGTTCAAACCGAGAACTTTGTGCCTTTTAAG
GGTTTTAAGCTTACTCGGAAAATTCCGTTTGCCAGCCAAGCTTGTGATTA
TTCCGAAAAATCCATTGAGAAATCTGGCGGAGTTTTCGCTTCATGCGATG
TGCCTAAAGGAGAAATTGTTCTTGTGGAGAATCCTGTGTACTTTCAGTTT
AGTGCTCCATTTCTGAACTGCGAGTTGTGTGGAGTGCATCAGCAACAGCT
ATACACCTGTGATAACTGTCGTTATAGATCCTATTGCTCAAATCGTGTAT
GAAATCAGATGCAGAAGTCCACCAGTACGAGTGCTATGGATATAAAATTG
GACTCATCCCAATGCTTGAGGCTTACATGCTGTTTCGGTTGTTTTGCGAA
GCAAGGGATATATTTCTTCCGGCTATAAGTAGATTATGGCGATGGGATGG
GCGAATATTAGCAATCCCGGAGATGCTTGGACCTTTATCCTGGGAGACAT
GGCCAGGAAGAAAGAAAAAAAACCTTATATAATCTCTGTGTTGGG
FMO09394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18213-RB | 2997 | CG18213-RB | 104..1203 | 9..1111 | 5170 | 98.4 | Plus |
| CG18213-RC | 2994 | CG18213-RC | 104..1200 | 9..1111 | 5115 | 98.1 | Plus |
| CG18213-RD | 2988 | CG18213-RD | 104..1194 | 9..1111 | 5025 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17038636..17038970 | 1038..704 | 1475 | 97.3 | Minus |
| 3R | 32079331 | 3R | 17039029..17039195 | 703..537 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 17039347..17039507 | 510..350 | 775 | 98.8 | Minus |
| 3R | 32079331 | 3R | 17039738..17039873 | 239..104 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 17039574..17039685 | 350..239 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 17040006..17040100 | 103..9 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:45:53 has no hits.
FMO09394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:38 Download gff for
FMO09394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18213-RA | 97..1202 | 3..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:44 Download gff for
FMO09394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18213-RB | 98..1203 | 3..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:01 Download gff for
FMO09394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18213-RB | 98..1203 | 3..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:01 Download gff for
FMO09394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17038623..17038970 | 704..1053 | 97 | <- | Minus |
| 3R | 17039029..17039194 | 538..703 | 100 | <- | Minus |
| 3R | 17039260..17039286 | 511..537 | 100 | <- | Minus |
| 3R | 17039347..17039506 | 351..510 | 98 | <- | Minus |
| 3R | 17039574..17039684 | 240..350 | 100 | <- | Minus |
| 3R | 17039738..17039873 | 104..239 | 100 | <- | Minus |
| 3R | 17040006..17040106 | 3..103 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:44 Download gff for
FMO09394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12865069..12865228 | 351..510 | 98 | <- | Minus |
| arm_3R | 12865296..12865406 | 240..350 | 100 | <- | Minus |
| arm_3R | 12865460..12865595 | 104..239 | 100 | <- | Minus |
| arm_3R | 12865728..12865828 | 3..103 | 96 | | Minus |
| arm_3R | 12864345..12864692 | 704..1053 | 97 | <- | Minus |
| arm_3R | 12864751..12864916 | 538..703 | 100 | <- | Minus |
| arm_3R | 12864982..12865008 | 511..537 | 100 | <- | Minus |
