FMO09395.5prime Sequence
1093 bp (977 high quality bases) assembled on 2010-10-13
> FMO09395.5prime
CAGTCGACATGACCAAGGTGCAAAAAGAGGTGCGATGCGACCATTGCGGC
ACAAGCCAAGGGTCCAAGAGTGTTTTTTCAGGTCAGAAGGTGTTCCTGGG
CAGGAAAATAACAGACGTACTGGAGACCATCACCCACAGAAGCATCCCAT
CATCCTTGCCCATCAAGATATGCTTCGTCTGCACCTCCACATTCATGTCC
AGCGCGGCACTAATCGAGAAGGTCCGCGAGACGGTGGACAGGGTACAGGA
GCAGCCCGCCAAGAAGACTAAGGTAGCGGAAATAGAGGAGCCATCGACAC
AGGAAAGCGATAAGAAGGCGGTTAAGGTGCCAAAAAAGAACACCACCCTC
CGTCAGCGCAGCAAGTCCATAGCAGCTTTCCCGCCAAGCTTTGTGAATGG
AGCTAATACTAATACAGAAATCGAGATCATTAGTGCTTCGCCCAAGAAAC
TCGATAAGACCCCTAAAAAGCAGATATCTCGACTCTTCGAGGATAATCTT
AACGATTCGGTTAAGCTGACGCCCGCCAAAGAGGTGTCGTCTACTAAAAA
GGCTTTCCTTAATCTCTTTGGCAACGGCGGCAACGATGCCATCGAAGTAC
TGACCGAGAGCGAGGAAGAGGAGGACTCGGATAAAGGTCCTATCACCATT
AACACAAATAACTTTCAGTGTCCAGAGTGCGAATTTCACGCAAAGTTTCC
CAAACCGTACAAGGAGCATCTGCAGAAGGAGCACGGTCTTCAAAGACCAC
GCATATACCCCTGTACCTTGTGTATTAAGACTTTTGGAGTGCTTAAGACT
TTGAAAATCATTTAAGGGACACTCACTCACGCACTTTTGAAAGCGAGGCT
AAGACTAAGCGAAGAAAGCAAGGAAAAGAGGCTAGTCAGGGGCCAAGAAT
AAAATTGACGCAAAGGCAAAGGAGACAATGCTGTGAGTCAAAGGAAGAAG
CCAAAAGAAAAAAAGTCCAAGAGAAAAAGACCGAGAATCAAATGTATGTT
GAAACCAAAGTGGTTGACGAATTCGACGACTCAGTGACAATCAAAAGGGC
CTAAGATTGTGGGAGGAACGCCAACACAAGACCCAAGCTACCA
FMO09395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2199-RC | 2640 | CG2199-RC | 104..1153 | 9..1050 | 4915 | 98.5 | Plus |
| CG2199-RA | 2846 | CG2199-RA | 310..1359 | 9..1050 | 4915 | 98.5 | Plus |
| CG2199-RB | 2576 | CG2199-RB | 40..1089 | 9..1050 | 4915 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1340961..1341861 | 1037..144 | 4000 | 98.6 | Minus |
| 3L | 28110227 | 3L | 1341928..1342062 | 143..9 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:45:56 has no hits.
FMO09395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:38 Download gff for
FMO09395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RA | 308..1357 | 9..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:46 Download gff for
FMO09395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 40..1089 | 9..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:02 Download gff for
FMO09395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2199-RB | 40..1089 | 9..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:02 Download gff for
FMO09395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1340947..1341861 | 144..1050 | 98 | <- | Minus |
| 3L | 1341928..1342062 | 9..143 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:46 Download gff for
FMO09395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1340947..1341861 | 144..1050 | 98 | <- | Minus |
| arm_3L | 1341928..1342062 | 9..143 | 100 | | Minus |
