FMO09396.5prime Sequence
1049 bp (994 high quality bases) assembled on 2010-10-13
> FMO09396.5prime
CAGTCGACATGCGTTGCAGTTTGCAAAAGGACTGCGCAGCTCCCACGCAG
GAAAATTTTCGTCAGCAGATGCGTTTCCCAATTGTGATTTCCCTGCTTTT
GCTGCTTTTCTGCAGCGGTGAGAGTGTCGCCGCTGACGCAGCCAATCAGC
TGAAATTTTCCACCACGGAATGTAAACTCAAGGAGCCCATTTACGGCAGC
ACCTTCGACTTCAGTGGTCTCCACTCGGATTTGGCCCATGTGGTGAAGAG
CATGAACATTGGAGGCGACCAATTCGAGTTCAATATATGCGGAAATCTTT
CAAGAACCTGCAATGGGGAAAGTAATGTGGCAGCTTGTCTCAAAAGACAG
GGAAAGGAGTATATTTTGGGTCGTCAGCACGAGTTGTTCTACAACAATGG
AAATATGTTTCTGAAGTACAAAAGCGGCGCATAATGCGACAATGGCACTG
CCGACAAGCCCAACTACCAGCTGCATGTAATGTTCTCCTGCGACTATACT
TTGGATGCCCAGCCTATGCACGTAACGCCTTACGCCAACGAAGTGTGTTC
TTTTTACATCTCATATAGGACGCCTTTGGCATGCCTATCCATTCCCGAGG
GTCTACAATCCAATAGTTGCAGAGTGGGCGACACAAAGTCAAATGGAACC
TTCGATCTGATGCCGCTGAGTGATAGTAACTATCATACGAGCAATCGTCA
AGGCGCCTTCTTTGTGATCAATGTCTGTAAGCCGGTGCTTTATGGAGAGA
ACAGCATGTGTCCGGCAGCAGTAGCGTTTGTCTATTTGATAGTAAAGCCA
CAAATCCAAAGAACGATTTATCAATTTCGGCAATGTACAAACGCATCCCG
TGGTGGAGAAGGGCAGCTACTGCTCAGCATGAGTCACCAACGCCATGTGC
CAGAACTCCAGTGCAACTACACCAGCGTGATTTACTTTAGCTGTGACAGT
CATAGAATGCCCATCCGGAGTCGCGGGTCTGGGAGCCGATTCTGCACCTA
TCAAGTCAACTTTGCACGCCTTGGCCTGTAATGATTCTCAACCGGTGCA
FMO09396.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lerp-RE | 3535 | CG31072-RE | 59..1112 | 9..1049 | 4820 | 98 | Plus |
| Lerp-RB | 3457 | CG31072-RB | 74..1127 | 9..1049 | 4820 | 98 | Plus |
| Lerp-RD | 3571 | CG31072-RD | 98..1148 | 9..1049 | 4765 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26861414..26861691 | 810..534 | 1340 | 99.6 | Minus |
| 3R | 32079331 | 3R | 26861989..26862208 | 371..152 | 1100 | 100 | Minus |
| 3R | 32079331 | 3R | 26861769..26861934 | 534..369 | 815 | 99.4 | Minus |
| 3R | 32079331 | 3R | 26861212..26861349 | 948..815 | 475 | 96.4 | Minus |
| 3R | 32079331 | 3R | 26862480..26862569 | 152..63 | 450 | 100 | Minus |
| 3R | 32079331 | 3R | 26862637..26862693 | 65..9 | 285 | 100 | Minus |
| 3R | 32079331 | 3R | 26861060..26861146 | 1035..953 | 205 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:46:01 has no hits.
FMO09396.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:00:39 Download gff for
FMO09396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lerp-RB | 37..1089 | 9..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:42:47 Download gff for
FMO09396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lerp-RB | 74..1126 | 9..1048 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:40:04 Download gff for
FMO09396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lerp-RB | 74..1126 | 9..1048 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:40:04 Download gff for
FMO09396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26861770..26861933 | 370..533 | 99 | <- | Minus |
| 3R | 26861991..26862207 | 153..369 | 100 | <- | Minus |
| 3R | 26862480..26862566 | 66..152 | 100 | <- | Minus |
| 3R | 26862637..26862693 | 9..65 | 100 | | Minus |
| 3R | 26861201..26861348 | 816..955 | 93 | <- | Minus |
| 3R | 26861408..26861691 | 534..815 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:42:47 Download gff for
FMO09396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22687713..22687929 | 153..369 | 100 | <- | Minus |
| arm_3R | 22688202..22688288 | 66..152 | 100 | <- | Minus |
| arm_3R | 22688359..22688415 | 9..65 | 100 | | Minus |
| arm_3R | 22686923..22687070 | 816..955 | 93 | <- | Minus |
| arm_3R | 22687130..22687413 | 534..815 | 99 | <- | Minus |
| arm_3R | 22687492..22687655 | 370..533 | 99 | <- | Minus |
