FMO09401.5prime Sequence
1109 bp (960 high quality bases) assembled on 2010-10-13
> FMO09401.5prime
CAGTCGACATGACTACTTTGGAGGAGCCTGTCCAGGCGGCGGACACGGTC
GATCCGTGTCCTCCGGGGATTCCCAATCTGAAAACCGTTCTCAGCGACGA
TGCCTCGAACTCATCGGTGCTGGAGGACATCGATGTGAGCAATACGAGCA
GCAGTAGCTCCAGTTCTAGCAGCTCTAGCTCCAGCTCTGGTTCCTGCTCG
GGATCGGGCACCGATACGGACACCGGCAAGGGTAGCAGCAATGTCGGCAG
TCTGGATGTGACTAGCTCATCGAGCATTGGTTCAGAGACTTCCATCTCAT
CGACGGGCTCCACAGCCATTGCAGGACCATCCACTTTGCTAGACGATTCG
AACTCATCCGGACTGGGCCTGGTGGTGGATGTGGATAGCAACGGGAGCAG
CCAGGAGCTGAGCAGCCACGGCGTCACCGAGCTGGACTCGCTGGAGGACT
CGTGCAGCGGCCTAATGATCAAGGATGGGGATAAGCTATGCAAGCTGTGC
AGCTTACGCCTCGTGATGCCGCGCATCTTGTCTTGCCTCCACGTATTCTG
TGAGGACTGCCTGCAGGCAGTGGTATCGAAGGACACGATGTCGGCCAGCT
CGCCCAACAGCTGCTCCTCGTCGTCGTTCGATGGCAGCGAGCACCAGAAC
CGTTTGTCCGCTGTGTTCATCGAATGCCCCGTGTGCAAGCAGGAGACACC
GCTGGGACCCAAGGGTATCAAGGCACTACCCTGCGACTATATCGTGACCA
ATATACTGGACCTCTCCAATTTGGAGTCCGAGCACATTGTGTGCACATCG
TGCAAGAGCAAAGAGGAAGGCATTTCGCGTTGCAACGACTGCGCCAACTT
TCTTTGCAATGGCTGCGATAACGCCCATAAGTATATGCGTTGCTTCGAAA
ATCACCATGTTGTGCGCATCGAGGATCTGACCCAGACGTCCACGACAAGC
TGATCATCCATAGCCAGTGTTCTGCCCACAGCACGTTAGCGAGAATCTCA
AGTACTATTGCTTCCACCTGCCAGTGTCCACGGTGCATGATTGCTGCTGA
GCGATACAAAGGGCAGCGAACATATATATAGAAACGGCCACGGGTGGCGG
GAACAGGGC
FMO09401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-P26-RD | 8899 | CG12218-RD | 955..2047 | 9..1100 | 5065 | 98.2 | Plus |
| mei-P26-RC | 23041 | CG12218-RC | 927..2019 | 9..1100 | 5065 | 98.2 | Plus |
| mei-P26-RB | 22580 | CG12218-RB | 517..1609 | 9..1100 | 5065 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9166539..9167032 | 9..502 | 2470 | 100 | Plus |
| X | 23542271 | X | 9167155..9167731 | 500..1073 | 2445 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:34:52 has no hits.
FMO09401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:58:54 Download gff for
FMO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-P26-RA | 815..1895 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:07 Download gff for
FMO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-P26-RB | 510..1590 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:46 Download gff for
FMO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-P26-RB | 510..1590 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:46 Download gff for
FMO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9166532..9167032 | 1..502 | 99 | -> | Plus |
| X | 9167158..9167737 | 503..1079 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:07 Download gff for
FMO09401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9060565..9061065 | 1..502 | 99 | -> | Plus |
| arm_X | 9061191..9061770 | 503..1079 | 97 | | Plus |
