FMO09403.5prime Sequence
1124 bp (1028 high quality bases) assembled on 2010-10-13
> FMO09403.5prime
CAGTCGACATGGCTTGGAAACAGAAAAATAAACTCCTTTTTGACACTTGT
AAAAACCAGTTAAGCTGTGGCGCCGTAAACGCCAGATCCTCGATGATGCA
GTCCATCCAGTCTAGGATCAACGTGCTTAACACCATTGCTGCTTCCAGCA
AGCGGATTGAACGCGCCAGCGTTGACACGGACACCCACGATGCGGACGCC
AACTGCGACGGGCCCGACCTGGACTTCGTGTACGCGGACGTGGATGGCTA
TCAGAACGAGATCGCTGAACTGTATAGCTACACGGAGTTCAGCGAGTTTC
AGATGAACGTGAAGGCCTTCGAGGACCAGATGGAGCTGTACGACCTGCCG
CCCAACTGGCAGAAGCAGGACTCCGCCTCCCAGCGCGGCATCGTGATGAA
GCTGGTGGACCAGCTGGAGGTCTCCGATCGATCCTTTCGCATGCAGGCCG
CCCGGTGCATCCTTTACCTGGCCCAAGGCTGCTGGGCGGAGGTTCAGTCG
GACGAGGAGCAGCACCAGATCACCAGGGACAATGTGCTGGTGCTCTACCA
ACTCGGCGTCTTCGCCTCCTTCATCGACCTGCTCAACATGGAGATCGAAA
GCGCCTGCTCTCCGGACATTGTGGCCGTCAAGATCACTAACGTCACGCTT
GTGGACTCCACGGACATTCGGGTGATCCTATCTGTGCTCTACATCATCAC
AGAAACGATTCGCGATGAAAAGGAAAAGGGCAGCGAAGACTACAGAGAGC
TGGCCGACTCCTTTGTGCAAGAAATCAACTCACCACTACCAGATGGCGAA
CTTCTGGCCGTCAAGCTGTTGGGCATGATCACACGGTTTTGCAGTGGCGC
AGCACCGCAGTTCCCCATGAAGAAGGTTGTCCTCCTGCTGTGGAAAGTTT
CGCTGCTGGGACTGGGAGGCATGGATGTGCTCAAGAATCTCAGAACGAGT
ATCGATTGAAGTGGGTTTGGAACCCATCACCGAGGAACACGCTGGAGGTT
ACCAAGTGCATGCAGCAGCTCACCGCCGGCACAGCTACTGATATACTGAG
AACCAGTATTCCCAAGCGTACTCAACGCCTCCTGATGAGCCACCGTTTGA
CGAGCCCGGACCGAATGAACTGTA
FMO09403.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strip-RB | 3161 | CG11526-RB | 3..1066 | 9..1068 | 5130 | 99.2 | Plus |
| Strip-RC | 3792 | CG11526-RC | 345..1238 | 179..1068 | 4280 | 99.1 | Plus |
| Strip-RA | 3596 | CG11526-RA | 608..1501 | 179..1068 | 4280 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3324717..3325602 | 1059..179 | 4090 | 99 | Minus |
| 3L | 28110227 | 3L | 3328698..3328869 | 180..9 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:34:59 has no hits.
FMO09403.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:58:56 Download gff for
FMO09403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RB | 1..1082 | 7..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:10 Download gff for
FMO09403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RB | 1..1082 | 7..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:51 Download gff for
FMO09403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strip-RB | 1..1082 | 7..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:51 Download gff for
FMO09403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3328699..3328869 | 9..179 | 100 | | Minus |
| 3L | 3324700..3325601 | 180..1075 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:10 Download gff for
FMO09403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3324700..3325601 | 180..1075 | 98 | <- | Minus |
| arm_3L | 3328699..3328869 | 9..179 | 100 | | Minus |
