FMO09406.5prime Sequence
1138 bp (998 high quality bases) assembled on 2010-10-13
> FMO09406.5prime
CAGTCGACATGGCCAGCAGCAAGGAGTTATGCTCCATCCGGGAATGGGCA
CCGCTCACGGAGGTCATCGAGCGGATTCCGGCGCGCCTGCAGCGCGGTTT
CTTTCCGGCGAATCTCAACCTGACCTGTGTGGACGCCACCGAGGAGTTCC
TAGCCATGGGCAGCGACGCGGGCATCGTCTTCTGGTATAATCGCCACACG
GGCGAGATGCAGAAGCTGAAGGCTGAGGTGGCCACTCGGATTACGTGCGT
GCGGGTTGTCAACTCCGTCGAGTACATGGTTGCGGCTGGGTGCGCCAACG
GGCAGGTGAGCATCTTCCAGATACAGAAGGAGCTGCCACGGGACCTTGAT
TTGGTGGCTCCTTGCACCAAGAGTCGGCCCATTGAGCGGTATACTATCCG
GGATCTGCACAAGTGCGTGGTCAGCTGCTGTGAGTGGTCCAAGAACGGGA
TGAAGCTCTATTCCGGCGATCGCCAGGGAGTGGTGGTGCTCACGGAGCTC
GATTACCAGGCGCACCTCAGCAAATCGGTGGAGATCCTGAGCGAAGCATA
CGAGATCGTACAGCTTAGCGTTCGGCAGAGCTACCTACTGGTGGCCACCC
TCTACCGTTGCATCGTATGCCAGATGGACGCTCAAACCTCGCAGTGGAAC
ATCACCCAGGTGGGAAAGAAGGATCGCAAACAGCTCATCGACTGCGGGGC
CATATTTCTGAAGAAACAGGAAGCAAACAAGCCGCAACTTGTCTGCGGAC
GTCCTGTCTGCGCTTCTGGGTGGCAGACGCTGCGGGAAATGTGTCCAAAA
CAGTGATATTCCGAGATGTCGTTCTGCGCAGTCCCACCTGGGAAATACCT
ATTCTGAACCCAAGCAGCGCAGTGAGCCGTTCGGTACCCACCACACGTCT
GCGTCTACATCTTCGACTAGACATTCTGGACTGGCAGATGGCGATGGTGG
GCTACGTGGCCCAGCAGCAACTTTCGGCAACTATTATCTTTTACGATGGC
CACCGACTCACTACTGGTACCCCACGGACGATGCATACCTCCTGTACGTA
CTTTAACTTGGATCGACCTCAAAGTGAAGCCGTTGCGCCGAGGATTGCGA
AGATTCTTTGAATTTCTGCGTCTGTGGCAAGAGATCTT
FMO09406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11141-RC | 3243 | CG11141-RC | 134..1256 | 7..1138 | 5105 | 97.7 | Plus |
CG11141-RA | 2497 | CG11141-RA | 134..1256 | 7..1138 | 5105 | 97.7 | Plus |
CG11141-RB | 2753 | CG11141-RB | 390..1512 | 7..1138 | 5105 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7461736..7462344 | 1130..512 | 2175 | 94.5 | Minus |
2R | 25286936 | 2R | 7462412..7462698 | 512..226 | 1435 | 100 | Minus |
2R | 25286936 | 2R | 7462784..7463006 | 229..7 | 1115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:35:09 has no hits.
FMO09406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:58:57 Download gff for
FMO09406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11141-RA | 370..1500 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:15 Download gff for
FMO09406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11141-RB | 382..1512 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:56 Download gff for
FMO09406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11141-RB | 382..1512 | 1..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:56 Download gff for
FMO09406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7461727..7462343 | 513..1138 | 95 | <- | Minus |
2R | 7462412..7462696 | 228..512 | 100 | <- | Minus |
2R | 7462786..7463009 | 1..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:15 Download gff for
FMO09406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3349232..3349848 | 513..1138 | 95 | <- | Minus |
arm_2R | 3349917..3350201 | 228..512 | 100 | <- | Minus |
arm_2R | 3350291..3350514 | 1..227 | 98 | | Minus |