FMO09407.5prime Sequence
1129 bp (1026 high quality bases) assembled on 2010-10-13
> FMO09407.5prime
CAGTCGACATGGCGACTGTGGCGGAGGGCAGCAAAATGCTCGAGGCAGCA
TTACAGCAAATGGACGGCCTTATATCGAGTACCGCGACACAGGCGGGATC
CGTTTCTATATCCGGAGCAGGGTCTTCCCTGACACTCAGCGAACGCAACT
TAATTTCGGCCACTAATGTTTTGTCAACAGCTAAGACTTTGGCTCTCGCC
CTGCAACAGGTCGGACTGGCTGCTCCAGCACCGGATCCTGTCACGGCGGC
CATTATCAGCGACTGGCTGGAGACGCACATACCTCGTCAGGATTCCGACG
AGCGTATGCGTCGCCTGCAACGGGATAAGGAGGGCTTAGCCCTGCAGTAT
CAGATGCTGGCGGAACGAGTGTCAGAACAAGCGGACAAGATTATCGAGCT
GGAGGGTCTGATAACGGAAAAGAGCCAGCAGTTGTGTACCAAGGAAGAGC
AACTGCAACGACAGATGATTTCTAGTTCCGCCCTCGAGACGCAAAAGCTG
GAGCTAATGAGTGCCTTAAGTGAACTAAAACTGCACCGTACTGCATTAGA
GCAGGCTAACGATGGAGGTAGCGCCATTTCCGCCAATATTCCTTACGGCA
GTTTGAGCAACATTAATCAGAAGGCCTTTATGGGATCGCCCAAGACACCG
CCCTCTGCACTGCGGCACCAAATCAAACCGCAGTTCCACAGCCTGCCAAG
ATCGCATGGCAAGTTTGTGAACAACAATAACAATCGTGCCTTAGACGTCA
ATGCCAACAGCAGCGGCAAGCAGCGAAACGTGGCCTTTGCTTCGAACGAA
CACATTTTGATTGATGACAATCATCATCAAGCGGAGGATGCAATGACTTC
CAGCTTTATGTCGCAGTTTACACCCTCACCAAAGCTGATGGAAAGATCTG
CCCGTGGCTTGCGCAACATACTTGGGTAAGCTACGACGCAGCAACAGCAG
CAACTGCGAGCTGACCGCCTGGAGCAGGCAGAGCCCGAGTTTCGACGGAG
GAGGGAGCCCGGAGCTACGGCAGGCGGTCGAATTTGATGGAGTGCCTCAG
ACTCCGTGGTTCGGGTGAAATGAAAACATTGGACACCCTGGGGGGAGCGC
AGGAGGTGTGCCAATTGGTTGGGCATACT
FMO09407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Liprin-beta-RC | 2723 | CG10743-RC | 164..1277 | 8..1128 | 5215 | 98.4 | Plus |
| Liprin-beta-RA | 2787 | CG10743-RA | 228..1341 | 8..1128 | 5215 | 98.4 | Plus |
| Liprin-beta-RB | 2813 | CG10743-RB | 254..1367 | 8..1128 | 5215 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13513856..13514764 | 208..1122 | 3970 | 97.8 | Plus |
| 3L | 28110227 | 3L | 13513591..13513794 | 8..211 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:35:13 has no hits.
FMO09407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:58:58 Download gff for
FMO09407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10743-RA | 233..1346 | 8..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:17 Download gff for
FMO09407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-beta-RB | 254..1367 | 8..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:57 Download gff for
FMO09407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Liprin-beta-RB | 254..1367 | 8..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:57 Download gff for
FMO09407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13513591..13513792 | 8..209 | 100 | -> | Plus |
| 3L | 13513858..13514769 | 210..1129 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:17 Download gff for
FMO09407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13506691..13506892 | 8..209 | 100 | -> | Plus |
| arm_3L | 13506958..13507869 | 210..1129 | 97 | | Plus |
