FMO09408.5prime Sequence
1108 bp (999 high quality bases) assembled on 2010-10-13
> FMO09408.5prime
CAGTCGACATGTCGAGCTTTGTGCTGGACAAGGAGGCGTTCGTGCGCCGC
GTGAAACGCCTCTACACGGAATGGAGGGCTCCCAGCATCGGACACGATGA
CGCGCTCAGGAATCTGGACTGCATCATGAGCATCGTGGGCGTCGAAGAGG
ATGTCATGTACTCCAAGTCCATGGCCCTGCAGCTCTGGCTGCTGGGCTAC
GAGCTGACGGACACCATCTCAGTGTTTTGCTCGGATGCCGTGTATTTTCT
CACTAGCAAAAAGAAAATAGAATTCCTGAAGCAGACGCAGAACATCACCG
AAGAAGGTTTTCCGGAAATCAATCTGCTTGTTAGGGATCGGACGGACAAG
GACCAGGGCAACTTCGAGAAGCTCATCAAAGCCCTGCAAAACTCGAAGAA
GGGCAAGCGTTTGGGCGTCTTCGCCAAGGACGCCTATCCCGGGGAGTTCA
GCGAAGCATGGAAGAAATCCCTGACGGCGTCCAAGTTCGAGCATGTGGAC
ATTAGCACTATTATCGCCTACCTCATGTGTCCCAAGGATGAGTCGGAGAT
CAACAACATACGCAAGGCATCGCTAGTGTCAATGGACATTTTCAACAAGT
ATTTGAAAGATGAGATCATGGACATTATTGATTCGGATAGGAAAGTCAAA
CACAACAAGCTCTCAGATGGCTGCGAGGCTGCCATTGGCGAGAAGAAGTA
CACCAGTGGTCTGGATCCCAGACTCCTCGATATGGCCTACCCACCCATCA
TCCAATCGGGAGGAGCCTACAGCCTGAAGTTCTCCGCGGTGGCGGACAAA
AATCCCTTGCACTTCGGTGTGATTGTGTGCTCCTTGGGCGCCCGCTACAA
GTCGTATTGCTCAATATATCGCGCACCTTTCTGGTGAATCCCACCGAGGC
CATGCAGGAGAACTACACATTTCTGGTAAGTGTGCAGAGGAGATTCTCAA
GCTGCTGGGTTCTGGCACAAAGCTGTGCGACGTCTACGAAAAAGAACCCT
GACTTCGTGAGAGGAAAAGCCGAGTATGGGTGACAATCTGGCCCAAAGCT
TTGGATTCGCCCATGGCCTAAGTCGGGGAACTCCATGTATCGGGACCAAT
GCAGGCGC
FMO09408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dre4-RA | 3690 | CG1828-RA | 135..1219 | 9..1086 | 4990 | 98 | Plus |
| dre4-RB | 3573 | CG1828-RB | 135..1219 | 9..1086 | 4990 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1874796..1875219 | 1061..641 | 1715 | 95.8 | Minus |
| 3L | 28110227 | 3L | 1875287..1875587 | 641..341 | 1505 | 100 | Minus |
| 3L | 28110227 | 3L | 1875652..1875916 | 341..77 | 1325 | 100 | Minus |
| 3L | 28110227 | 3L | 1876109..1876178 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:35:16 has no hits.
FMO09408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:58:59 Download gff for
FMO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dre4-RA | 152..1234 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:18 Download gff for
FMO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dre4-RB | 128..1210 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:58 Download gff for
FMO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dre4-RB | 128..1210 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:58 Download gff for
FMO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1875287..1875586 | 342..641 | 100 | <- | Minus |
| 3L | 1875652..1875915 | 78..341 | 100 | <- | Minus |
| 3L | 1876110..1876185 | 1..77 | 94 | | Minus |
| 3L | 1874776..1875218 | 642..1079 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:18 Download gff for
FMO09408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1875287..1875586 | 342..641 | 100 | <- | Minus |
| arm_3L | 1875652..1875915 | 78..341 | 100 | <- | Minus |
| arm_3L | 1876110..1876185 | 1..77 | 94 | | Minus |
| arm_3L | 1874776..1875218 | 642..1079 | 95 | <- | Minus |
