FMO09411.5prime Sequence
1096 bp (1009 high quality bases) assembled on 2010-10-13
> FMO09411.5prime
CAGTCGACATGTCGGACGACAAGCGCTTCAACGCGGCGGGCTTTGTAAAG
TGCACGAGAAATCGGACGATAGAATACCTTTATCAGGATCACACGCCGCC
CAACCTGTGGAAACACGCGCCAATTGTGGATCCTCACAATCCCTACGACC
AGGATGAGAAAAAGCAATACAAAATGTTTACGTATCACGTAGAGCATAGA
TACAATACGCTTCTGCCAGATATTCCCTTCGAAAGGCTGAATCTCATTAA
AGAATATGTTCACACAAATCAGGTGAACACCACTGAGATTCTTAATGAGC
ACATGACCACAAAGGAATATCTGGACGAGTATATTGCGCTGGAGAATCAA
ATGCTAGCAGCCCGCTATGGAGCCATTGTCACAAGGAGAAGAAGATTGGT
TGATTCCGCGAGATTTATGGAGGACAATTTGGATGAGGGACTGGCGAAAA
AAATGTGCATGGACAAGAATCTGCCAATGGACACGAACGAAACTGTTCTT
ATTGACCAATCTTTGGTGGATGAAAACAGCAGGTCGTTAACCACAGCCGA
GTCTACGATGGGCATCAGTCAGGCGGAGAACTCTACTTTAAAGAGTAGCG
AAGTCGAGGCGACTTTAAGCGTCAGCCATATAGAAAACTCCTTAAGCGAT
AGCCAAGAAGAGAATCCTCCGCTGAGCAGCACATTAGCCATTAACGAGTC
TAGTGTTCTCGACAGCACGAGAGTGGATCCCATAAAAGATCTCACTCTAG
ATGAACTGTTGCTAATCGATTCAGGATCAGTATGGAAGAGCTTTCCGATA
TTCAAATGCATACAGATTTAGAAGATCAACGCCAGTTGTCGCCCATGTTG
CAGATGGTTAGCCCATCGATGGAGCAAAACGCTCATATCATTGAGATGGA
TGCTGATCTTATCATGAATGTTCCAAGGGAGTGAGCTATCCTATTCTGCT
GAATGTTATGGGTCTCCCCATAAACGCCTGCGTCGAAATGCATCTTTAAC
TTCACTGAGTCGACTATCAGCAGCACGCCTTCTATTAAGCGAGAAGGACA
CAAAAATCCCCCACCACCTCCCAGACCTGTTACTTGCCAATTGCAG
FMO09411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cap-H2-RF | 3976 | CG14685-RF | 807..1895 | 8..1080 | 4955 | 98.1 | Plus |
| Cap-H2-RD | 2933 | CG14685-RD | 572..1660 | 8..1080 | 4955 | 98.1 | Plus |
| Cap-H2-RE | 4015 | CG14685-RE | 807..1615 | 8..815 | 4020 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10763143..10763951 | 8..815 | 3995 | 99.9 | Plus |
| 3R | 32079331 | 3R | 10764147..10764339 | 813..999 | 685 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:34:45 has no hits.
FMO09411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:58:53 Download gff for
FMO09411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-H2-RA | 807..1900 | 8..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:03 Download gff for
FMO09411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-H2-RD | 572..1665 | 8..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:43 Download gff for
FMO09411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cap-H2-RD | 572..1665 | 8..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:43 Download gff for
FMO09411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10763143..10763951 | 8..815 | 99 | -> | Plus |
| 3R | 10764150..10764373 | 816..1025 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:03 Download gff for
FMO09411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6588865..6589673 | 8..815 | 99 | -> | Plus |
| arm_3R | 6589872..6590095 | 816..1025 | 93 | -> | Plus |
