FMO09412.5prime Sequence
1066 bp (961 high quality bases) assembled on 2010-10-13
> FMO09412.5prime
CAGTCGACATGATGCTCACATCCATAAACAACTCCTTTGAGCAGGACACC
CACGATGCGGACGCCAACTGCGACGGGCCCGACCTGGACTTCGTGTACGC
GGACGTGGATGGCTATCAGAACGAGATCGCTGAACTGTATAGCTACACGG
AGTTCAGCGAGTTTCAGATGAACGTGAAGGCCTTCGAGGACCAGATGGAG
CTGTACGACCTGCCGCCCAACTGGCAGAAGCAGGACTCCGCCTCCCAGCG
CGGCATCGTGATGAAGCTGGTGGACCAGCTGGAGGTCTCCGATCGATCCT
TTCGCATGCAGGCCGCCCGGTGCATCCTTTACCTGGCCCAAGGCTGCTGG
GCGGAGGTTCAGTCGGACGAGGAGCAGCACCAGATCACCAGGGACAATGT
GCTGGTGCTCTACCAACTCGGCGTCTTCGCCTCCTTCATCGACCTGCTCA
ACATGGAGATCGAAAGCGCCTGCTCTCCGGACATTGTGGCCGTCAAGATC
ACTAACGTCACGCTTGTGGACTCCACGGACATTCGGGTGATCCTATCTGT
GCTCTACATCATCACAGAAACGATTCGCGATGAAAAGGAAAAGGGCAGCG
AAGACTACAGAGAGCTGGCCGACTCCTTTGTGCAAGAAATCAACTCACCA
CTACCAGATGGCGAACTTCTGGCCGTCAAGCTGTTGGGCATGATCACACG
GTTTTGCAGTGGCGCAGCACCGCAGTTCCCCATGAAGAAAGTTGTCCTCC
TGCTGTGGAAAGTTTCGCTGCTGGGACTGGGAGGCATGGATGTGCTCAAG
AATCTCAAGAACGAGTATCGATTGAAGGTGGGTTTGGAACCCATCACCGA
GGACACGCTGGAGGTTACCAAGTGCATGCGAGCCAGCTCACCGCCGGCCA
CAGCTACTGATATACTGGAGAACCAGTATCCCAAGCGGAACTTCAAACGC
CTCCCTTATGAAAACAGCGGTTTTTTGGACGAGCCCGGAGCAGATAGACA
TGGAGATGGGCCGCAACGAGGTTCAAATATTGCCAACAATGCAGCCGCAT
GGCGGAAACGGGGAGG
FMO09412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Strip-RC | 3792 | CG11526-RC | 310..1366 | 9..1066 | 5025 | 98.7 | Plus |
| Strip-RA | 3596 | CG11526-RA | 573..1629 | 9..1066 | 5025 | 98.7 | Plus |
| Strip-RB | 3161 | CG11526-RB | 173..1194 | 44..1066 | 4850 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3324700..3325637 | 946..9 | 4675 | 99.9 | Minus |
| 3L | 28110227 | 3L | 3324518..3324616 | 1066..970 | 240 | 92 | Minus |
Blast to na_te.dros performed 2014-11-26 14:34:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 76..143 | 988..1055 | 115 | 63.2 | Plus |
FMO09412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:58:54 Download gff for
FMO09412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RA | 569..1629 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:06 Download gff for
FMO09412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11526-RA | 569..1629 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:45 Download gff for
FMO09412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Strip-RA | 569..1629 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:45 Download gff for
FMO09412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3324700..3325641 | 1..946 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:06 Download gff for
FMO09412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3324700..3325641 | 1..946 | 99 | | Minus |
