FMO09415.5prime Sequence
1109 bp (1000 high quality bases) assembled on 2010-10-13
> FMO09415.5prime
CAGTCGACATGACGGTGGATTTCAACGATTATTTTTGGGGGGAGAAGAAC
AATGGCTACGATGTTCTGTACCACAACATGAAGTTCGGCCTGATTGCCAG
CAAGGAGTTATCCGAGTTTCTGCGCGAGAAGTCTAACATTGAGGAGCAGA
ACTCAAAGATGATGTCCAAGCTGGCCCACAAGGCTGGTACACTAAATAGC
ACATTCGCTCCTGTTTGGACCATACTGCGAACATCGGCAGAGAAGCTCTC
CACGCTCCACCTGCAGATGGTGCAAAAGCTGACTGAGCTGGTCAAGGATG
TTGCCAAGTATGCCGACGAGCTGCACAAAAAGCACAAATCCGTCAAGGAG
GAGGAATCGCAGACTCTTGAGTGTGTCCAAGCCATCCAGACGTCGACGGT
GGCAGTGCAAAAGTTGCGCGATCTGTACGCCAGCAAGGTCCAGGAGCTGG
AGAAGCTGCGCAAGGACAACGGCTCGCACAAGGATGCCGAGAAGCTAGAG
AGCAAGCTGAAAAAACTGCAGGAGGAGTACAAGGCTTTGTTGGACAAGCA
TAACCCCATTAAGAACGAATTTGAGAGACGCATGACACAGACCTGCAAGC
GCTTTCAAGAGATTGAGGAGGTGCACCTTCGTCAAATGAAGGAGTTTCTG
TCCACGTATCTAGAAATGCTGCAAAACAATCACGATATGGTGGGTCAAGT
ACATTCCGACTTTAAGAGGCAGTTTGTCGACATGTCTGTTGATAAACTCC
TGGAACAGTTTGTGCTCAATAAATACACGGGATTGGAGAAGCCAGAAATG
CCTGAACTGGAGTATGTGGCCTTGTCGAGTGGTTCTCGCCTTCAACAGCC
GCAGTCTCGGGCCAGCGCATCTAACTCCAATTCGGCCACCAGCATTCAGC
TGCTCTGCGGCTGGAAATGCAGCAACGACTGGCCTCGGGCAGTGCGTTGT
CCATGGATCATCGGGGCGATGCCCTTGGCGGCAATTCTTCTCTGGGTCAG
CGAGTTGCAGCCAGCGGTAGTATACCTTTTGCGAGATCGATACTGGGAGC
TATGGCTCTCTCCGCGTCCAATCGCCGGACATGCCTGGCCGGAGCATGCA
TCGGAATCA
FMO09415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8176-RG | 4549 | CG8176-RG | 430..1528 | 9..1104 | 4965 | 97.7 | Plus |
| CG8176-RF | 4726 | CG8176-RF | 430..1528 | 9..1104 | 4965 | 97.7 | Plus |
| CG8176-RE | 4465 | CG8176-RE | 430..1528 | 9..1104 | 4965 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9521415..9521976 | 38..599 | 2810 | 100 | Plus |
| 3R | 32079331 | 3R | 9522038..9522235 | 598..795 | 990 | 100 | Plus |
| 3R | 32079331 | 3R | 9522292..9522529 | 793..1032 | 705 | 90.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:35:31 has no hits.
FMO09415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:01 Download gff for
FMO09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8176-RC | 323..1425 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:28 Download gff for
FMO09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8176-RF | 430..1532 | 9..1107 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:06 Download gff for
FMO09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8176-RE | 430..1532 | 9..1107 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:06 Download gff for
FMO09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9521321..9521350 | 9..38 | 100 | -> | Plus |
| 3R | 9521416..9521976 | 39..599 | 100 | -> | Plus |
| 3R | 9522040..9522235 | 600..795 | 100 | -> | Plus |
| 3R | 9522295..9522610 | 796..1108 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:28 Download gff for
FMO09415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5348017..5348332 | 796..1108 | 91 | | Plus |
| arm_3R | 5347043..5347072 | 9..38 | 100 | -> | Plus |
| arm_3R | 5347138..5347698 | 39..599 | 100 | -> | Plus |
| arm_3R | 5347762..5347957 | 600..795 | 100 | -> | Plus |
