FMO09418.5prime Sequence
1106 bp (994 high quality bases) assembled on 2010-10-13
> FMO09418.5prime
CAGTCGACATGTCATTGGAGGATCTCAAGATCAAGCTGCGCCGTCATCCG
AAGTTATTGGGCCTTGGAGGAGTTGGCCTTATTACTGCTGCTGGTTTCTT
GCTGTACGAGTCGCCCCAGGTCCGCCGGTTCCTTTCCCAATATGTGGACA
AGAAATCGCCGGAGCCGGACAAACGGCGTGCCGAGTACATCTACATCAAA
TACCACATCTACCGCGAGTCCATGCGAAAGTTGAAGCAGAAAGAGGAGGA
CGAGAAGAAGTGGATCAGCGTGATCATCAACCCGATTGGGAAATGGTGGA
AGGCGGCTAAGCACTCGGTGGCCTGGCGTCTGCTCAATATCGCCCAAACT
GGCAGCCAGCCGGAACGCCTCAAGGCGGTCCAGCAGCTCATCTGCATGGA
TCACTTGAAGGACTGGGATTTCCGTCATCTGGCCCAAATCTGCGATGCCC
GCACGGCTGTCTCCTTGGCCCGTTGCAATGCCGACACGCGATGGTTTATG
CCCGTTCCCCGACGTGGGTGCATTAAGAATCCCAAGATGCTCCTCTCGGA
ACTTCACGTGATGCTGGCCCGGCTGCGACCCATGGCCTGCATTGACCACT
TCTTCAGCAAATACTTTCCCGAACAGGATCCCATTGAGGACATTCACGAA
TACTTGACCCAGGAGCAGACAATAGTCCTTTCCACAGCCGACACGGACTT
ACTAAAAGAAATCATTTCATTCCTGCACCATATTACAAAGGATCCCGAGG
TCTCCGCCAGGCTTATGAGGGACGGAGGCCTCGTGCATCTCATGGAGCTA
CGAAAAATATTCAACGACGACACGAGACCTTATCGACTTTGTGCAAAGTG
TTGGCCAATATGTCCCTGGTGCCCGATGCCGTGGAACATTTCTTTACGTC
CGGATGGGTGGGCGCCCTGGCCGAGTGCAACATGCCCAGATCTCCGCCTG
CAGGTGATCTCGGCTAAACTATGGCAATCTGGATCACGACGATCCGAGCA
GTGCACGTATTCCGCCAAATGTTCTATCCCTGCATCCACGAGTCGCCACC
CCGCAAGAGCAAAGCGACATGTTTCGTTCATGAATGCTTGGAGGGTTTTT
ATCACC
FMO09418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10383-RB | 3046 | CG10383-RB | 479..1588 | 9..1106 | 4995 | 97.8 | Plus |
| CG10383-RA | 2870 | CG10383-RA | 303..1412 | 9..1106 | 4995 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18692968..18693515 | 636..89 | 2740 | 100 | Minus |
| 2L | 23513712 | 2L | 18692496..18692908 | 1043..636 | 1630 | 96.9 | Minus |
| 2L | 23513712 | 2L | 18695045..18695124 | 88..9 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:35:42 has no hits.
FMO09418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:03 Download gff for
FMO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10383-RA | 293..1338 | 1..1043 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:33 Download gff for
FMO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10383-RA | 297..1342 | 1..1043 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:12 Download gff for
FMO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10383-RA | 297..1342 | 1..1043 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:12 Download gff for
FMO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18692496..18692908 | 636..1043 | 97 | <- | Minus |
| 2L | 18692969..18693515 | 89..635 | 100 | <- | Minus |
| 2L | 18695045..18695130 | 1..88 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:33 Download gff for
FMO09418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18692496..18692908 | 636..1043 | 97 | <- | Minus |
| arm_2L | 18692969..18693515 | 89..635 | 100 | <- | Minus |
| arm_2L | 18695045..18695130 | 1..88 | 96 | | Minus |
