FMO09420.5prime Sequence
1159 bp (1038 high quality bases) assembled on 2010-10-13
> FMO09420.5prime
CAGTCGACATGGAGGCACAAAAACTCACGGAACTGTTGCGCGCAACTATT
GATCCGAATCCGGAACAGCGCAAGGCGGCCGAGGATCAACTGGCCCAGAT
ACACAAAATCATCGGATTTGTGCCCACCATACTGCAGATCGTTATGCAGA
CGACGGTGGAACAGCCGGTGCGCCAGGCCGGTGCTGTCTACCTCAAGAAT
CTGATCAACAGCAGCTGGTCGGACCACGAGGCCAAGCCTGGAGAGCCAAT
ACCCTTCTCTATACACGAACAGGATCGGGCTATGATCCGTGGCGCTATTG
TAGATGCTATTGTGCACGCCCCCGAGTTGATTAGGGTCCAGTTGTCTGTC
TGCGTCAATCACATCATTAAAAGCGATTTCCCTGGACGCTGGCCACAGGT
GGTGGATAGCATCAGCATATATCTGCAAAACCAGGATGTCAACGGCTGGA
ACGGAGCTCTGGTAACCATGTACCAGCTGGTCAAGACCTACGAGTACAAG
CGGCATGAGGAGAGGACGCCGCTAAACGAGGCAATGAACCTACTGTTGCC
CATGATCTACCAGCTGATGGTCCGACTGCTGGCAGAGCAGTCCGAGCAAT
CTGTGCTGCTACAAAAGCAAATTCTCAAGATCTACTATGCCCTCACGCAA
TACACCCTTCCACTGGACCTCATTACCAAGGAGATCTTCTCGCAGTGGAT
GGAGATCTGTCGTCAGGTGGCTGATCGCGCAGTGCCCGATAGCTCGCACC
TGGACGATGATGAGCGAACGGAGTTCCCCTACTGGAAGACTAAGAAGTGG
GCCCTGCACATCATGGTTCGCATGTTCGAGCGTTATGGCAGTCCCAGCAA
TGTGGTTAGTGAAAAATACCAAAAATTCGCAGAGTGGTATCTGCCCACGT
TTAGCCAGGGCGTGCTGGAGTGCTCCTCAGATCCTCGACCAGTACCGAAA
CAGAGTCTACGTCTTCACACGCGTCCTCACTGAATGTGCTCACTATCTGA
AGAATGCGGTTAGCCACGCCTTACCCTTGAGCTGATTAAGCCTCCAATGG
TGCTGTCATCAGGACGTGATCTTCCCATCATGGTCGTTTACTGAACTCGA
ATCAGGAGCTCTGGAAGGCGAATCTCAGATTCATCCGCCTAGTTCGAATT
CTTTGAGAG
FMO09420.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msk-RA | 3979 | CG7935-RA | 262..1371 | 9..1114 | 5150 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8117594..8118093 | 333..832 | 2500 | 100 | Plus |
| 3L | 28110227 | 3L | 8117302..8117541 | 96..335 | 1200 | 100 | Plus |
| 3L | 28110227 | 3L | 8118156..8118334 | 832..1008 | 655 | 96.1 | Plus |
| 3L | 28110227 | 3L | 8116440..8116529 | 9..98 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:35:50 has no hits.
FMO09420.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:04 Download gff for
FMO09420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msk-RA | 256..1382 | 2..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:37 Download gff for
FMO09420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msk-RA | 255..1381 | 2..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:15 Download gff for
FMO09420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msk-RA | 255..1381 | 2..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:15 Download gff for
FMO09420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8116433..8116529 | 2..98 | 95 | -> | Plus |
| 3L | 8117305..8117540 | 99..334 | 100 | -> | Plus |
| 3L | 8117596..8118093 | 335..832 | 100 | -> | Plus |
| 3L | 8118157..8118333 | 833..1007 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:37 Download gff for
FMO09420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8109533..8109629 | 2..98 | 95 | -> | Plus |
| arm_3L | 8110405..8110640 | 99..334 | 100 | -> | Plus |
| arm_3L | 8110696..8111193 | 335..832 | 100 | -> | Plus |
| arm_3L | 8111257..8111433 | 833..1007 | 96 | -> | Plus |
