Clone FMO09421 Report

Search the DGRC for FMO09421

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:94
Well:21
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12769-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09421.5prime Sequence

1161 bp (1019 high quality bases) assembled on 2010-10-13

> FMO09421.5prime
CAGTCGACATGAACTTCCAGATGGCCGAAACGATCAGTACAGCGGCCAGC
GGCATGGAGTTGGCCCTAAAAGACCCCAGTCCAACGGTGGGTGGCGGCAT
CATTGTGGACATGACGCCCACCACGGCGGCGCTGCTGCATCACAACGCTA
TGGCGCTGCGCAGCCTCAAGGATGCCGCCTCATCCGCCTCCGAATCAGAG
CTACAGGAACCGCGATCACCGACACCCACGCCCACGAATCTCAGCACCGG
CCCCCACTCGCCGCCAATGACCTTCCGCTGCGAGCGTTGCGACAGTTTCG
AGACCAGCTCGCGGGCATCCCTGCTGCTCCATGTCGTCCAGTGTCTGGCT
GGTCAGGCGGCGGCGGCGGCAGCAGCGGCGGCGGCATCGGCCCGCCTGAA
GAGTGAGGATCTGCAGGAGCCGGAGAACATGAGCTTGGGTCACATGGAGG
GCGGCAAGGGCGATGGCCAGACGGGCAATGGTTCCAGCTCCTCGGCTAGC
TCCTCTCCGGCCGGGAATAGCGGAGGAGGAGGCGGTGGCAACAGCAGTTC
GCGCAAGGTCTTCGAGTGCGATGTGTGCAACATGAAGTTCTCCAACGGCG
CCAACATGCGCCGCCACAAGATGCGACACACTGGTGTCAAGCCCTACGAG
TGCCGGGTGTGCCAGAAGAGATTCTTCCGCAAGGATCACCTGGCGGAGCA
CTTCACGACGCACACCAAGACGCTGCCCTATCACTGTCCGATCTGCAATC
GTGGCTTCCAGCGCCAGATAGCTATGCGCGCCCACTTCCAGAACGAACAT
GTTGGCCAGCATGATCTGGTGAAGACGTGTCCGCTTTGCAGCTACCGAGC
GGGGTCCATGAAGTCGCTGAGGATTCATTTCTTCAACCGTCACGGCATCG
ATCTGGATAACCCGGGGACCGGGTGGCACCTCTTCGTTGCTCCTGGTCCC
TGGAATCACAGGCTTCGGCGCGGCAGCAGCGGGCGGCAGCTAGTTACGTG
GCCACCTGGACTTAGTCGGGTGCCGGTGCAATCTCAGTCCCAGCAGCAGC
ACAGCACAGGTGGCTCCCTCGGCTAGCGATAGCGGCGAGTCATGCGATCC
CTGGAGAAATGCCAGCCCTCATGCACATCTCAGGCCCCAGTGGGAGATTC
TCCCAGCCTTG

FMO09421.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12769-RA 3863 CG12769-RA 1209..2341 9..1139 5285 98.3 Plus
CG12769-RC 4740 CG12769-RC 314..1436 19..1139 5235 98.3 Plus
CG12769-RB 4707 CG12769-RB 314..1436 19..1139 5235 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8056244..8057343 1108..9 5060 98.9 Minus
Blast to na_te.dros performed on 2014-11-26 14:35:54 has no hits.

FMO09421.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:04 Download gff for FMO09421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12769-RA 1209..2330 9..1129 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:39 Download gff for FMO09421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12769-RA 1209..2330 9..1129 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:18 Download gff for FMO09421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12769-RA 1209..2330 9..1129 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:18 Download gff for FMO09421.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8056229..8057343 9..1121 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:39 Download gff for FMO09421.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3943734..3944848 9..1121 98   Minus