FMO09423.5prime Sequence
1112 bp (1012 high quality bases) assembled on 2010-10-13
> FMO09423.5prime
CAGTCGACATGTCCTTCCTGCGCGGTTCCGTGAGCTATGTGTGGTGCACC
ACCAGCGTCCTGGGAAAGGGAGCCACCGGTTCCGTGTTCCAGGGGGTCAA
CAAAATCACCGGCGAATCGGTGGCGGTGAAGACCTTTAATCCCTACAGTC
ACATGCGACCGGCTGATGTGCAGATGCGGGAGTTCGAAGCCCTGAAGAAG
GTCAACCACGAGAATATAGTAAAGCTGTTGGCGATCGAGGAGGATCAAGA
GGGGCGTGGTAAGGTGATCGTGATGGAGCTCTGCACAGGCGGAAGTCTCT
TTAACATCCTGGACGATCCTGAGAACTCGTACGGTCTGCCGGAACACGAG
TTCCTGCTGGTCTTGGAACACTTGTGCGCCGGAATGAAGCACTTGCGGGA
TAACAAGCTGGTGCATCGCGATCTCAAGCCCGGAAACATAATGAAGTTCA
TCTCGGAGGACGGGCAAACCATATACAAGCTTACTGATTTCGGTGCTGCT
AGAGAACTGGAGGATAATCAGCCGTTTGCCTCTCTATACGGCACAGAAGA
GTATCTTCATCCCGATCTCTACGAGCGCGCTGTGCTGAGGAAGTCAATCC
AGCGATCGTTCACCGCCAATGTGGATTTGTGGTCGATTGGGGTCACGCTC
TACCATGTGGCCACCGGAAATCTGCCTTTTAGACCTTTTGGTGGAAGGAA
AAACCGAGAGACCATGCACCAAATCACCACCAAAAAGGCTTCTGGGGTGA
TTTCCGGCACTCAGCTGTCCGAGAATGGACCAATTGAATGGTCCACCACG
TTGCCACCGCACGCCCATCTCTCGCAGGACTGAAACCCTGGTGACGCCTC
TTCTAGCTGGACTTCTCGAGGAGATAGGGAGAAGACCTGGTCTTTCGATC
GGTTCTTCCATGAGTGACGCTCATCCTCCGCAAGCGTGTCATTCATGTTG
TTCTTCACCAATCGGACTAGTTTCGGTGGAGTGTTCCTGGAGCCAGACGA
GCAAATTGACACTTCGAAGAGCGTATTTTCTGCACCGAGGGTGCCGCTGG
GAGAAGCAGATCCTTTTTGTTCACACGAGCATCTGGGAGAAAGAAGGGTT
ACCTCCACCGAC
FMO09423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ik2-RC | 2551 | CG2615-RC | 177..1282 | 5..1108 | 4895 | 97 | Plus |
| ik2-RB | 2461 | CG2615-RB | 87..1192 | 5..1108 | 4895 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20676459..20677402 | 91..1030 | 4185 | 97.7 | Plus |
| 2L | 23513712 | 2L | 20676301..20676389 | 5..93 | 430 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:35:23 has no hits.
FMO09423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:00 Download gff for
FMO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ik2-RB | 65..1175 | 1..1111 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:22 Download gff for
FMO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ik2-RB | 84..1194 | 1..1111 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:01 Download gff for
FMO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ik2-RB | 84..1194 | 1..1111 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:01 Download gff for
FMO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20676298..20676388 | 1..92 | 96 | -> | Plus |
| 2L | 20676461..20677480 | 93..1111 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:22 Download gff for
FMO09423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20676298..20676388 | 1..92 | 96 | -> | Plus |
| arm_2L | 20676461..20677480 | 93..1111 | 96 | | Plus |
