FMO09424.5prime Sequence
1084 bp (1031 high quality bases) assembled on 2010-10-13
> FMO09424.5prime
CAGTCGACATGTCAGGCGCCAATCCCTTCGCCCAGTTCGAGAAAACTTTC
TCCCAGGCCGGCACAACATACAAGTACTTTGACCTCGCCTCCATCGATAG
TAAATATGATCAACTGCCCTACTCGATCCGAGTGCTCTTGGAGTCGGCGG
TTCGCAACTGCGACAACTTCCATATCCTAGAGAAGGACGTGCAGAGCATC
CTGGGATGGTCGCCCGCCCTCAAGCAGGGATCCAACGATGTGGAGGTGTC
CTTCAAGCCGGCCCGTGTCATCCTGCAGGACTTTACTGGAGTTCCTGCTG
TGGTGGACTTTGCAGCTATGCGCGATGCTGTTTTGGATCTGGGCGGCGAC
CCGGAGAAAATCAATCCCATCTGCCCCGCCGACTTGGTCATCGATCACTC
GGTCCAGGTGGACTTCGCCCGTGCGCCTGATGCTTTGGCCAAGAACCAGT
CACTGGAATTTGAGCGCAACAAGGAGCGCTTCACCTTCCTGAAGTGGGGA
GCCAAGGCCTTCAACAACATGCTGATCGTGCCACCTGGCTCCGGTATTGT
CCACCAGGTGAATCTGGAGTACTTGGCCCGCGTGGTGTTCGAGAATGACG
CAACCGATGGCTCCAAGATTCTGTATCCCGACAGTGTGGTGGGCACTGAT
TCCCATACCACGATGATAAATGGATTGGGCGTACTTGGTTGGGGAGTGGG
AGGCATCGAAGCGGAAGCTGTGATGTTGGGCCAATCGATTTCCATGTTGT
TGCCCGAGGTAATTGGCTACAAGTTGGAGGGCAAACTGAGCCCACTGGTC
ACATCCACCGATCTGGTGCTGACCATTACCAAGCACCTGCGACAGTTGGG
TGTGGTGGGAAAGTTTGTGGAGTTTTACGGCCCGGGAGTTGCGGAACTCA
GCATTGCTGACAGGGCCACCATCAGCATATGTGTCCCGAATACGGAGCCA
CCGTGGATACTTCCCCATCGATGAGATACTCTTGGTTACTGAAGCAGACA
ATCGGTCTGAAAAGAAGAATCGACATCATTCCGCCAGTATCTGAAGGCAA
CTCCAGCAGCTGCGCAACTATTGCTGATGGCGAT
FMO09424.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Irp-1B-RA | 2901 | CG6342-RA | 55..1126 | 9..1079 | 5140 | 99.1 | Plus |
| Irp-1A-RA | 2882 | CG4900-RA | 76..1120 | 15..1053 | 1980 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10410779..10411291 | 1001..493 | 2350 | 99 | Minus |
| 3R | 32079331 | 3R | 22723351..22724054 | 974..276 | 1405 | 81 | Minus |
| 3R | 32079331 | 3R | 10411352..10411569 | 494..277 | 1090 | 100 | Minus |
| 3R | 32079331 | 3R | 10411628..10411799 | 279..108 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 10412620..10412715 | 108..13 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 22724117..22724283 | 279..113 | 340 | 80.2 | Minus |
| 3R | 32079331 | 3R | 10410649..10410716 | 1071..1001 | 205 | 95.8 | Minus |
| 3R | 32079331 | 3R | 22724359..22724454 | 108..13 | 195 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:35:28 has no hits.
FMO09424.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:01 Download gff for
FMO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1B-RA | 95..1175 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:25 Download gff for
FMO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1B-RA | 48..1128 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:03 Download gff for
FMO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Irp-1B-RA | 48..1128 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:03 Download gff for
FMO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10410638..10410716 | 1001..1084 | 91 | <- | Minus |
| 3R | 10410779..10411289 | 495..1000 | 98 | <- | Minus |
| 3R | 10411352..10411567 | 279..494 | 100 | <- | Minus |
| 3R | 10411629..10411798 | 109..278 | 100 | <- | Minus |
| 3R | 10412620..10412721 | 4..108 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:25 Download gff for
FMO09424.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6236360..6236438 | 1001..1084 | 91 | <- | Minus |
| arm_3R | 6236501..6237011 | 495..1000 | 98 | <- | Minus |
| arm_3R | 6237074..6237289 | 279..494 | 100 | <- | Minus |
| arm_3R | 6237351..6237520 | 109..278 | 100 | <- | Minus |
| arm_3R | 6238342..6238443 | 4..108 | 96 | | Minus |
