FMO09425.5prime Sequence
1130 bp (1013 high quality bases) assembled on 2010-10-13
> FMO09425.5prime
CAGTCGACATGCTGCGCATTCCTGGAATGCCCCTTCTTCCGGGGACTCTC
TTTCGCGATGTATCCAAGGGACATTACCCCAAACCGCAATCGCTGGCCAA
TGTCCAAGGTCTGAGCATGCTGAGTGATCGCCAGCAACCGGCTCCTGTGG
AATCGGGCAGCGTTACGGTGGACATAAGCTGTCCCCCAGTTGGGGCGTCC
TCCATATATCCGCCACGTTCGGGTCCCCGTATGCCTCCATGGCTGGCGTA
TGACAAGAAGGTGCTGTGCTTCCATGCCTACTTCAAGCAAACCCTTCAGG
AGGTCTACCATGCGCCCTATCTGGTGCGCAAGGTTAAGATCTACTACTAT
CTGGAAGATGGTACTTTAGAGATCTACGAGCCCCGGGTGGACAACTCGGG
AATTGTGCAGGGATGTGTAGTTCATAGGCAGCGGGTCCAGAAGGCGCCGC
CGTGCGATAATGAGTTCATGTCCCTCATCGATCTGAACGTGGATCAGACT
GTTCAGATATTTGATCGTCAGTATCATATCACCGATTGCGATCCGTTCAC
AAGAACTTTCTTAAACAAACGCGGCATAACCGTTCCCGATCCGGTCAAAT
CGCCATGCGATCCCACCGAGGAGCAACGAAAGCGTGAAAACCAACCGCGA
TCTGGTAATTTAATCCCAAAGAATCATCCGTTTGCCCAGTTCCTCAAGTA
CGATAGGCAAATACTCAAGTTCCAGGCGTACTGGGACGATAGAACCGAGT
TCGGAGACGTACGCAAGCTGGAGCTGTGCTACTATCTCTCCGACGATACC
ATCGAAATCAAGGAGCAGCACATTCGCAACTCAGTCGCGACGGCCCAACC
GTTTTTCTTAACGCGGGCGCTTAGCTCGAGAGTTCGAAGGACTCCAGCTG
CCAGGACAGATGACCCCGATGACGCTACTGACGTCCTGGGCACCAACATG
CGCAACGTGCGCTACTGCGTGATCCGCTGACACTGAAACAAGGAGATTCA
TTACTATAGGGAAAGGATCTCCAGAAAGGCAGTGTGATAACGTGTATGCG
TGCGGTGGTGAAAACCGACTGATCCTCACCAGAACTAATACCGCCAGCGA
ATTGCATACAGAATTAACCCAATGCGAATC
FMO09425.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Efhc1.1-RA | 2559 | CG8959-RA | 77..1199 | 9..1115 | 5160 | 98.1 | Plus |
| Efhc1.2-RA | 2572 | CG11048-RA | 401..700 | 232..531 | 300 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15782978..15783525 | 607..60 | 2740 | 100 | Minus |
| X | 23542271 | X | 15782647..15782922 | 880..607 | 1280 | 99.3 | Minus |
| X | 23542271 | X | 15781811..15782007 | 1068..880 | 590 | 94.9 | Minus |
| 2R | 25286936 | 2R | 20240390..20240689 | 232..531 | 300 | 73.3 | Plus |
| X | 23542271 | X | 15783581..15783634 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:36:10 has no hits.
FMO09425.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:07 Download gff for
FMO09425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8959-RA | 1..1129 | 9..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:47 Download gff for
FMO09425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.1-RA | 77..1205 | 9..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:24 Download gff for
FMO09425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Efhc1.1-RA | 77..1205 | 9..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:24 Download gff for
FMO09425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15781752..15782007 | 880..1120 | 91 | <- | Minus |
| X | 15782648..15782921 | 608..879 | 99 | <- | Minus |
| X | 15782978..15783525 | 60..607 | 100 | <- | Minus |
| X | 15783584..15783634 | 9..59 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:47 Download gff for
FMO09425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15675785..15676040 | 880..1120 | 91 | <- | Minus |
| arm_X | 15676681..15676954 | 608..879 | 99 | <- | Minus |
| arm_X | 15677011..15677558 | 60..607 | 100 | <- | Minus |
| arm_X | 15677617..15677667 | 9..59 | 100 | | Minus |
