FMO09427.5prime Sequence
1116 bp (1027 high quality bases) assembled on 2010-10-13
> FMO09427.5prime
CAGTCGACATGGACGAAGATATCCTAAACGCTGTGGAGTCCCTGTTCGGC
AAGGATGTCAAGATTGTGGACTGCGAAACCTCATCCTCGCTGCAGCAGGA
GGAGGTGTTGCTGGTCAACGGAGTGCCGGTGAAGCTGGATGGGCTGCCGG
CGGATGATGCCAGTGCCATAAAGGCAGCTTTGCTGGAGGGGCAGATGCCA
TCGGTTGAGCACCTGAATCAATTGCTCTTCCGCGCCGGATTGGCCCAACA
GCCCATCGAGGTAGAGACCTCGTTGACCGTCAAGTCCTCTCTGACCACCA
CGGAGGAGGTGCTGGTCTCGCGCAACGGACAAATCCTAGACGAACGCACC
GTGGAGACCAAGGAAAACTTTAACCATCAGTCGCACCAGAAAGAGATCTG
GCATCCTGTCAAGCAGCAGTCGGCCTTGGCGCGTGCCACTCCCGAGAATG
CCCTCAAATACCGAACCACTTCGAATTCCACGTTCGCATCGCAGGCCACA
GACTCGGACGAGCGTCCAGTTGATCCTTTGGGCCGGCAGCTGAACCAAAC
CTTCTCGAATGCTTCCCTTATGTCCAGCAGCTCTGCTATTACTGGATCCG
ATCAGGTCATCGGATCTGTATCATCCACCACTATTGGGGACAAAAGCTCG
AATATAAGCAGCTGCGACTCCGGGCACGATGGCCTCTTCCACAGCGTGTC
GATGAGTGCACCCTGGTCACATCCACGTGACACCTTAACCGACTCTTTGT
ACTGCGACATTCCCAGCTCCGCAGATGAGTCGGATGCGGTTTCTATCCTA
AACACCCACTTGAAGATCACAGAGCCATTCGATTGCCAAACAGCGCCAGT
TTACGCCAAAGACATACCCAAGAAGGCAACCTGGATTCGGTGGTCAACCT
GCTTATCAATAATAATACTAAGATTTGCGGTTTGCCTTTCTGACCACTTC
CCGCTTGTTTCACCACCACACCAGCTGCTTTCCAAAATCATGCCAGATGA
TATGAGGAGGAAACGGTGTTACGACTTTGGACGATGCTAGAACACCCTGT
TCCGGGACTTTAGCATGACTGCTTTGCAGGACTGAAATAGCGTAATGTAA
AGATGGCAGTTTTGAA
FMO09427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4853-RB | 2992 | CG4853-RB | 521..1630 | 8..1101 | 4995 | 97.8 | Plus |
| CG4853-RA | 2829 | CG4853-RA | 358..1467 | 8..1101 | 4995 | 97.8 | Plus |
| CG4853-RC | 2814 | CG4853-RC | 358..1452 | 8..1101 | 4760 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17514737..17515529 | 8..800 | 3950 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17515585..17515778 | 801..991 | 820 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:36:17 has no hits.
FMO09427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:08 Download gff for
FMO09427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4853-RB | 484..1515 | 1..1028 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:52 Download gff for
FMO09427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4853-RA | 354..1385 | 1..1028 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:28 Download gff for
FMO09427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4853-RA | 354..1385 | 1..1028 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:28 Download gff for
FMO09427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17514733..17515529 | 1..800 | 99 | -> | Plus |
| 2R | 17515585..17515819 | 801..1028 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:52 Download gff for
FMO09427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13403090..13403324 | 801..1028 | 96 | == | Plus |
| arm_2R | 13402238..13403034 | 1..800 | 99 | -> | Plus |
