FMO09428.5prime Sequence
1093 bp (997 high quality bases) assembled on 2010-10-13
> FMO09428.5prime
CAGTCGACATGATTATGACGATGATGCAGACGGTAAGGGCATGGCAACAG
GAATCGGATGTGGAGCACCGAAAACAACATAAGCAGCGATGGCGACCTGA
TGGGGCACACATATCAGCGGCTTACGACCTCAACAGTGATAATGACGACG
GCCACCACAGGGTGGTGCATAATCAAAACAACGGCAGCCCAAACAGCTCT
CCGAATCAGAGCACTTCCGCCTTCCGACAGCGGCAACCGCACCACCCACC
CACCGGACAACAACCGCCCCGGCTGCCCTGCACCGTAACCCACTTCTCCG
CACACTGGAAAACGCTGCTCATCCTGCTCACCCTGCTCTCCGCTTCCACG
CTGACAGCCTCCGCCAATGTCACCAGCACCATCAGTCCGCCCATCAACGG
CAGCAGCACCGATTACATCCTGCTCTATGGCGAATCCACCACATCCCTTG
TGCCCGCCCTGACCACCGGACTCTCGGGGGACGGAAGTGGTGCGGTTATC
GAGGACGAGGAGGATGCCGAGAAGGCCAGCGAGTACATCTTTGATCGCAC
CGATGTGCGCATAATATTCATCACACTCTACACACTGGTGTTTTGCTGCT
GTTTCTTTGGTAACCTCCTTGTTATTTTGGTGGTCACATTATCACGACGA
CTGCGCTCAATAACCAACTTTTTCCTCGCCAACTTGGCGTTTGCCGACTT
CTGTGTTGGACTCTTTTGTGTGATGCAGAATCTGTCCATCTATCTGATAG
AAAGCTGGGTCTTTGGCGAGTTCCTCTGCCGCATGTACCAGTTTGTCCAC
TCCCTGAGCTACACGGCCTCCATTTTCATCCTGGTTGTCATCTGTATGGA
GCGCTACTTTGCCATCGTACACCCCATTACCTGCAAACAGATCCTAACTG
CGGCTCGTCTGAGGATGGTCATTGTCACAGTTTGGATTACATCGGCAGTT
ACTCCACGCCCAAGTTTGTTTTTCAGCAGACCATTAAGACATCCACACGC
AGGACGGCAGAGGAGGAGATATTGTGTTCTGACGTGAGATGTTTCAACTC
CAGTTTGCTGACCTGATACTTGTGCTCTCTACGTTAGCCGCCT
FMO09428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TrissinR-RE | 3601 | CG34381-RE | 1290..2386 | 5..1091 | 5035 | 98.1 | Plus |
| TrissinR-RD | 3637 | CG34381-RD | 1290..2386 | 5..1091 | 5035 | 98.1 | Plus |
| TrissinR-RC | 2811 | CG34381-RC | 500..1596 | 5..1091 | 5035 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5845348..5845954 | 5..611 | 3020 | 99.8 | Plus |
| 2L | 23513712 | 2L | 5850098..5850259 | 753..914 | 810 | 100 | Plus |
| 2L | 23513712 | 2L | 5848341..5848486 | 609..754 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 5850830..5850925 | 914..1007 | 305 | 92.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:36:21 has no hits.
FMO09428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:09 Download gff for
FMO09428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34381-RB | 450..1511 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:54 Download gff for
FMO09428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TrissinR-RC | 498..1559 | 1..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:29 Download gff for
FMO09428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TrissinR-RC | 498..1559 | 1..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:29 Download gff for
FMO09428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5845346..5845952 | 1..609 | 99 | -> | Plus |
| 2L | 5848342..5848486 | 610..754 | 100 | -> | Plus |
| 2L | 5850100..5850259 | 755..914 | 100 | -> | Plus |
| 2L | 5850831..5850980 | 915..1060 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:54 Download gff for
FMO09428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5848342..5848486 | 610..754 | 100 | -> | Plus |
| arm_2L | 5845346..5845952 | 1..609 | 99 | -> | Plus |
| arm_2L | 5850100..5850259 | 755..914 | 100 | -> | Plus |
| arm_2L | 5850831..5850980 | 915..1060 | 91 | | Plus |
