Clone FMO09429 Report

Search the DGRC for FMO09429

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:94
Well:29
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSIP2-RE
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09429.5prime Sequence

1143 bp (1023 high quality bases) assembled on 2010-10-13

> FMO09429.5prime
CAGTCGACATGAATTCTTCCAGCGTGACGCCGCGTTCAGTTCGTAGTAAC
AAAGCATTCTTGCTGAGGACAGCTGGAAAGGCGGAAAAGCAAGCCTCAGA
CAAAGCTACATGGTCTCGCACTTCTTCTTGTGGTGGCGTCTTCTCTACTC
CTCCCACCCAGAATGGCGACGGAAGCCCAAACAAAGGTAGGCTCAGTCAC
ATTCCAAATAGGCGTGGAGCGAGTCGGTCGTCTATCCATTCGCGAAAAAC
TTCTCTGGAACGGGTTACTTCTTCGACGAAAGCGCGCCCGTGTGTCAGTA
CGTATTCGTTGCCCAATCGACGGGTCGAGCCCGAGCATAAAGTAGTTGAG
CCCGATCGGAAAACTGATATCGATGAGTTGAATCCCCCCAAGCGGAACGT
GGTTCCCATAAAGACGCATGCCCAGTCAGCACAATTGGTTAAGTCAACGA
CATGCGAACCTTATCAAAATGTAAAGAAGCCTGAAAAGATGTCGCATCGC
CGTGTCCTGGAGATGAACCGGATGCGGGTCTTTGATACGCAGAAAAAAAA
ACTGGAGAACCTGCAGTCCGAGTTTATGCACAAGATCCGGTTAATGGGTT
CGGAGCTCCGGAATCAAGGGGTCTTCAAGTTTGTGGGTCTGACTGTAAAC
GATGAATGCAAGCTTGTGGTCCACCATGATGATCTACTTCGATTGCCCAA
GAGTATTCCCGCCGAAAGTATGAATGACTTGAAAACCAGGTGTCGTGCGA
TTGTAGATCAGGGGGTTTTGTTAATCTACGACCATATACCAAGATTTCAG
AGGGCTAAAAATGATCTCGAGGCTAGTGAAAAGCGTGAGGAAACTCAAAA
AAAGTTGTCTAACCTAGTGGAAGAAAAAATGAATTTAATCGTCGAGGAGA
TCGAACAGTTGTGCGGTGCATGCTCAAACAAGAGTCACCCAACAAAGTCC
TCTATCGCGAGATGTCCGAGTTGCGTTCCAGAAACAGGCCATGGAAGGTT
CGTTTATTTGACGCCAAAAGGAGCACCCTGAACAGATGAACCAGTTGCGA
TCGAGCTCCGATGCCAAGCTGAAACAGGACTGCAGTCGAGATTCAGATCA
TTGTAAAGCTGAAAAAGAGCCTGGCGGCGAAGCGAGATTGGCT

FMO09429.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
SIP2-RA 2973 CG13164-RA 172..1302 9..1136 5260 98.2 Plus
SIP2-RG 3025 CG13164-RG 172..1302 9..1136 5260 98.2 Plus
SIP2-RE 2910 CG13164-RE 172..1302 9..1136 5260 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12305529..12305872 456..113 1720 100 Minus
2R 25286936 2R 12305220..12305472 708..456 1265 100 Minus
2R 25286936 2R 12304964..12305125 870..709 795 99.4 Minus
2R 25286936 2R 12304632..12304902 1136..869 725 92.7 Minus
2R 25286936 2R 12305931..12305998 113..46 340 100 Minus
2R 25286936 2R 12306058..12306098 49..9 205 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:36:25 has no hits.

FMO09429.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:09 Download gff for FMO09429.5prime
Subject Subject Range Query Range Percent Splice Strand
SIP2-RG 164..1310 1..1143 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:56 Download gff for FMO09429.5prime
Subject Subject Range Query Range Percent Splice Strand
SIP2-RE 164..1310 1..1143 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:30 Download gff for FMO09429.5prime
Subject Subject Range Query Range Percent Splice Strand
SIP2-RE 164..1310 1..1143 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:30 Download gff for FMO09429.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12305529..12305871 114..456 100 <- Minus
2R 12305931..12305998 46..113 100 <- Minus
2R 12306062..12306106 1..45 91   Minus
2R 12304965..12305125 709..869 99 <- Minus
2R 12305220..12305471 457..708 100 <- Minus
2R 12304624..12304901 870..1143 92 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:56 Download gff for FMO09429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8192470..8192630 709..869 99 <- Minus
arm_2R 8192725..8192976 457..708 100 <- Minus
arm_2R 8192129..8192406 870..1143 92 <- Minus
arm_2R 8193034..8193376 114..456 100 <- Minus
arm_2R 8193436..8193503 46..113 100 <- Minus
arm_2R 8193567..8193611 1..45 91   Minus