FMO09429.5prime Sequence
1143 bp (1023 high quality bases) assembled on 2010-10-13
> FMO09429.5prime
CAGTCGACATGAATTCTTCCAGCGTGACGCCGCGTTCAGTTCGTAGTAAC
AAAGCATTCTTGCTGAGGACAGCTGGAAAGGCGGAAAAGCAAGCCTCAGA
CAAAGCTACATGGTCTCGCACTTCTTCTTGTGGTGGCGTCTTCTCTACTC
CTCCCACCCAGAATGGCGACGGAAGCCCAAACAAAGGTAGGCTCAGTCAC
ATTCCAAATAGGCGTGGAGCGAGTCGGTCGTCTATCCATTCGCGAAAAAC
TTCTCTGGAACGGGTTACTTCTTCGACGAAAGCGCGCCCGTGTGTCAGTA
CGTATTCGTTGCCCAATCGACGGGTCGAGCCCGAGCATAAAGTAGTTGAG
CCCGATCGGAAAACTGATATCGATGAGTTGAATCCCCCCAAGCGGAACGT
GGTTCCCATAAAGACGCATGCCCAGTCAGCACAATTGGTTAAGTCAACGA
CATGCGAACCTTATCAAAATGTAAAGAAGCCTGAAAAGATGTCGCATCGC
CGTGTCCTGGAGATGAACCGGATGCGGGTCTTTGATACGCAGAAAAAAAA
ACTGGAGAACCTGCAGTCCGAGTTTATGCACAAGATCCGGTTAATGGGTT
CGGAGCTCCGGAATCAAGGGGTCTTCAAGTTTGTGGGTCTGACTGTAAAC
GATGAATGCAAGCTTGTGGTCCACCATGATGATCTACTTCGATTGCCCAA
GAGTATTCCCGCCGAAAGTATGAATGACTTGAAAACCAGGTGTCGTGCGA
TTGTAGATCAGGGGGTTTTGTTAATCTACGACCATATACCAAGATTTCAG
AGGGCTAAAAATGATCTCGAGGCTAGTGAAAAGCGTGAGGAAACTCAAAA
AAAGTTGTCTAACCTAGTGGAAGAAAAAATGAATTTAATCGTCGAGGAGA
TCGAACAGTTGTGCGGTGCATGCTCAAACAAGAGTCACCCAACAAAGTCC
TCTATCGCGAGATGTCCGAGTTGCGTTCCAGAAACAGGCCATGGAAGGTT
CGTTTATTTGACGCCAAAAGGAGCACCCTGAACAGATGAACCAGTTGCGA
TCGAGCTCCGATGCCAAGCTGAAACAGGACTGCAGTCGAGATTCAGATCA
TTGTAAAGCTGAAAAAGAGCCTGGCGGCGAAGCGAGATTGGCT
FMO09429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SIP2-RA | 2973 | CG13164-RA | 172..1302 | 9..1136 | 5260 | 98.2 | Plus |
SIP2-RG | 3025 | CG13164-RG | 172..1302 | 9..1136 | 5260 | 98.2 | Plus |
SIP2-RE | 2910 | CG13164-RE | 172..1302 | 9..1136 | 5260 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12305529..12305872 | 456..113 | 1720 | 100 | Minus |
2R | 25286936 | 2R | 12305220..12305472 | 708..456 | 1265 | 100 | Minus |
2R | 25286936 | 2R | 12304964..12305125 | 870..709 | 795 | 99.4 | Minus |
2R | 25286936 | 2R | 12304632..12304902 | 1136..869 | 725 | 92.7 | Minus |
2R | 25286936 | 2R | 12305931..12305998 | 113..46 | 340 | 100 | Minus |
2R | 25286936 | 2R | 12306058..12306098 | 49..9 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:36:25 has no hits.
FMO09429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:09 Download gff for
FMO09429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SIP2-RG | 164..1310 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:56 Download gff for
FMO09429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SIP2-RE | 164..1310 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:30 Download gff for
FMO09429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SIP2-RE | 164..1310 | 1..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:30 Download gff for
FMO09429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12305529..12305871 | 114..456 | 100 | <- | Minus |
2R | 12305931..12305998 | 46..113 | 100 | <- | Minus |
2R | 12306062..12306106 | 1..45 | 91 | | Minus |
2R | 12304965..12305125 | 709..869 | 99 | <- | Minus |
2R | 12305220..12305471 | 457..708 | 100 | <- | Minus |
2R | 12304624..12304901 | 870..1143 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:56 Download gff for
FMO09429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8192470..8192630 | 709..869 | 99 | <- | Minus |
arm_2R | 8192725..8192976 | 457..708 | 100 | <- | Minus |
arm_2R | 8192129..8192406 | 870..1143 | 92 | <- | Minus |
arm_2R | 8193034..8193376 | 114..456 | 100 | <- | Minus |
arm_2R | 8193436..8193503 | 46..113 | 100 | <- | Minus |
arm_2R | 8193567..8193611 | 1..45 | 91 | | Minus |