FMO09431.5prime Sequence
1126 bp (1020 high quality bases) assembled on 2010-10-13
> FMO09431.5prime
CAGTCGACATGAGGGGTGTTCTCAAGTGGCTGGAACGCATAGAGTTTCCC
AATAGCAAAGACAATGAGATCAGTGTCCACAATGTGTGCTACGCACCCGA
TGGCAGCCAATTGGTGGTGGCTGCGGGGGATCGGTTGCTCATCTACGATC
CAAACGATGGCTCCTTGCTGAACACCTTGAAGGCGCACAAGGATACGGTC
AATTGTGTGGCCTACTCGCGGGATGGCAAGCGGTTCGCCAGCGGAGCCTC
CGATAAAATGGTCATCGTGTGGTCACCTCAGCTTGAGGGACTGCTCAAGT
ATTCGCACGGTGACTCCATACAGTGCATGAGCTTCAATCCTGTTTCGCAC
CACCTGGCCTCGTGCTCCTTGTCGGATTTTGCCTTTTGGTCGGCTGATCA
GAAGGCGGTGCAAAAGTACAAGATATCCGCGCGTGTCAATGGCTGCTCGT
GGACCAATGATGGACAGTACCTGATCCTGGGCCTGGCCAATGGCACCATA
TCCATTAGGAACAAGTTGGGCGAGGAGAAGGGGAGAATCGATCGGCCTGG
TGGGCCCAACAGCAACGTCTTCAGTGTCCAATGTTGTCCGGCCAGCGGTC
CTGGCAGTGTGGACACCATCGGTGTGGTGGACTGGAGCCAAACGCTATCC
TTTCACACTCTGAGCGGCCAGATGATTGGCAAGGAGCGAACCCTGGGCTT
TGATCCCTTGTGCCTGCAGTACTTTCCCAATGGGGAGTTCTGCCTGGTGG
GCGGCTGCACTGGAGGTCTACACTTCTTCACCAGGGAGGGCATTCGGCTG
GGTACGTTGGGCGATACCTTTGACACCTGGATCTGGACAGTTGCCCTACA
TCCCAATGGTCAATCCTACACCATTGGGTGTCAAGATGGAACCCTGGCCT
GCTTCAACATTGCGTCCTAGTACCGTGCATGCCCTCTACCGCGAGCGCTA
TGCCTTCCGGGAAAACATGTGCGACGTGATCATTCAGCACCTGATCCTCT
GGCCCAAAAGGTGGCGCATCAGTGTTCAATTTAGTTCAGAAAATAGCCAA
TTTATCGATCGACTGCCGTTCAGTTGTCGACGTGTGGGTTCTCTTATGGA
CTGGACTCTGGGAAAGATCACCAATT
FMO09431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oseg1-RB | 4766 | CG7161-RB | 1154..2240 | 9..1094 | 5100 | 98.4 | Plus |
| Oseg1-RA | 3714 | CG7161-RA | 102..1188 | 9..1094 | 5100 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8410353..8411043 | 996..305 | 3410 | 99.9 | Minus |
| 3L | 28110227 | 3L | 8411114..8411348 | 305..71 | 1175 | 100 | Minus |
| 3L | 28110227 | 3L | 8411429..8411493 | 73..9 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:36:33 has no hits.
FMO09431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:10 Download gff for
FMO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg1-RA | 75..1153 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:59 Download gff for
FMO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg1-RA | 94..1172 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:35 Download gff for
FMO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oseg1-RA | 94..1172 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:35 Download gff for
FMO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8411115..8411345 | 74..304 | 100 | <- | Minus |
| 3L | 8411429..8411498 | 1..73 | 94 | | Minus |
| 3L | 8410276..8411043 | 305..1072 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:59 Download gff for
FMO09431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8403376..8404143 | 305..1072 | 98 | <- | Minus |
| arm_3L | 8404215..8404445 | 74..304 | 100 | <- | Minus |
| arm_3L | 8404529..8404598 | 1..73 | 94 | | Minus |
