FMO09432.5prime Sequence
1139 bp (1021 high quality bases) assembled on 2010-10-13
> FMO09432.5prime
CAGTCGACATGGCAGCGGATCAGGCCCATTTCCAGCAGCTTCTGGCCTCC
CTCTTGTCCACGGACAACGATGTTCGCCAGCAGGCGGAGGAAGCATACAA
CAATCTTTCAAGAGAGCTGAAGGTGACGCATCTCCTGGGCAACATCCAAA
ATGGCCAGCAGTCGGAGGAGGCTCGACAGATGGCCGCCGTGTTGCTGCGC
CGCCTGTTTACCACCGAGTTCTTTGATTTCTACAAAGGGCTTCCAGCTGA
ATCCCAGAACCAATTGCTTCAGCAGATCCTTTTGGCCGTGCAGCAGGAGG
TGACGCCGCAGCTGCGTCGCAAGATTTGCGAGGTAGTTGCCGAGGTGGCC
AGGAATCTGATCGACGAGGACTGCAACAACCAGTGGCCCGACATCTTGCA
GTTTCTCTTTCAATGCGCTAACTCGCCTACGCCGCAGCTGCAGGAATCGG
CACTGCGGATCTTCTCTAGTGTGCCTTCCATATTTGGAAACCAGGAAGCT
CAGTACATTGATCTGATCAAGCAGATGCTTGCCAAGAGCATGGACGCTGG
ATCCGATCCGGAGGTCCGAGTACAGGCCGTGCGAGCCGTCGGAGCCTTCA
TCCTCTACCACGACAAGGAGAACGAGACGGCCATCCACAAGCACTTCGCT
GATATGCTGCCCCGCATGATCCACATCACTGGCGAGACCATCGAGGCCCA
GGATGATCAGAGTCTGCTAAAGCTCCTGATTGAGATGACCGAGAATTGCC
CGAAGTTCCTGCGTCCCCAGCTGGAGTTCATTTTTGAGGTCTGCATGAAG
GTTTTCAGCTCGCAGACTTTGAGGACAGCTGGCGTCACCTAGTGTTGGAA
GTTATGGTGTCGCTCGCCGAGAACGCCCCGTCGATGATACGCAAGCGAGC
GGACAAGTATATCGTGGCCCTGATCCCGCTGATTCTTCATATGATGACGG
ATTTGGATGATGACGAGAACTGGTCCACCGCCGACGTGTCGATGATGACG
ATCACAGCGACAACAACGTGATCGCCGAGTCCTCGCTGGAATCGCCTCGC
CTGTGAATGGGGAGAAAAGAATTGGTGCCTCCGCCTCGTAATGAACCGCT
CTGCGATTATGTGTTGGGTCAAGGCGGAATTGGAACATT
FMO09432.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Karybeta3-RB | 4186 | CG1059-RB | 334..1442 | 9..1121 | 5250 | 98.6 | Plus |
| Karybeta3-RA | 4364 | CG1059-RA | 512..1620 | 9..1121 | 5250 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4650798..4651630 | 239..1070 | 3960 | 99.2 | Plus |
| 3R | 32079331 | 3R | 4650583..4650734 | 88..239 | 760 | 100 | Plus |
| 3R | 32079331 | 3R | 4649687..4649768 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:36:37 has no hits.
FMO09432.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:11 Download gff for
FMO09432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karybeta3-RA | 465..1573 | 9..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:01 Download gff for
FMO09432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karybeta3-RA | 512..1620 | 9..1121 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:37 Download gff for
FMO09432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Karybeta3-RA | 512..1620 | 9..1121 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:37 Download gff for
FMO09432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4649687..4649767 | 9..89 | 100 | -> | Plus |
| 3R | 4650585..4650734 | 90..239 | 100 | -> | Plus |
| 3R | 4650799..4651676 | 240..1121 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:01 Download gff for
FMO09432.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 475409..475489 | 9..89 | 100 | -> | Plus |
| arm_3R | 476307..476456 | 90..239 | 100 | -> | Plus |
| arm_3R | 476521..477398 | 240..1121 | 98 | | Plus |
