FMO09434.5prime Sequence
1148 bp (1062 high quality bases) assembled on 2010-10-13
> FMO09434.5prime
CAGTCGACATGGCAGAACCAATAGAAGGCGAACAGGAGGAAAAGCCTCCG
CCATCGAGGGCAAAGCGAATCACCTATCTGGTACTCCATGTGCTGCTCCA
TATCATATTCATATCTTACTTTACGGCAGCCACAATCATTTTCATCTTTT
ACGACAAGGATTCCAAAGAATGCTGGCCCAATAGGGGCTCGGAAGCCACA
ACCGAATCGATAGATAACTCAACCGAAGATGATGATGATGATGATTATGA
CACAGAAGAAACTTCTGAGAAGCCAGTGCCAGAGGTTAAGCCAAAACTAT
TGTGCCAAATTAACTGGTGTCATGGATACGGGTTTCTCATCGTCTTGTTC
ATCTTGTTTTATATCCTATGGCTGTACTACTGGGTATTTAAGCCATTCGT
GGGCATCAAGCTGTATAATAACTACCTGGAACCAGTGATTGACAAATGGA
TTGCGTTTAGTCGCCAGTGGATAGTGTCCGGCGTAATGCTGGCGATTGTG
CTCGCTGTGGTGGTGGCATACCTCGGATTCGAGTGCCGCAATGACGCATA
CAAGGCCATCGGACTGCTCGGACCTGTGTGCTTTGTCCTTATCGGATTCG
CCGTGTCCAAGCACCACTTGCAAGTACCTTGGCGCATAGTGACCCACGGT
CTCCTGGGACAGCTGCTGCTGGGCATACTCTGCCTGCGCCTCCCCTTTGG
CCGGTCCATCTTTCAATGCCTTGGGGACAAGGTGACGATATTTCTGAACT
ACGCACAGCACGGAGCACGCTTTGTGTACGGGGATCGCATTTGCGATGAG
TACGTCTTTGCATTTGCCATACTGGCGGTGGTGTTCTTCTTCAGCGTGAT
CACCAGCATTATGTATTACCTTGGCTGGATGCAGTTCATCCTGAACGGTT
TTGGGTTCCTCTTGCAGGCCATGGTGGGCACCACCGTTTGCGAAAGTGTA
AATGCAGCGGGCAACGTGTTTTCTAAGCATGACCGGAGCCTCTGGTCATC
CGGCCGTACATCGAAATACTGACCGTCAGCGAGTTGCACGCTATATTGCA
CCTCCGGCTACGCGACAGTGCTGTACTGTCTTGGGGGCTTTGTTGTCCTT
CGGTGCTTCCGCCAGCTTTCTTATCGCACCCAGGCGTAATGCTGCTTC
FMO09434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:35:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CNT1-RB | 2819 | CG11778-RB | 80..1219 | 9..1146 | 5450 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:35:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9083211..9083877 | 469..1133 | 3005 | 98.4 | Plus |
| 2R | 25286936 | 2R | 9082669..9082986 | 153..470 | 1590 | 100 | Plus |
| 2R | 25286936 | 2R | 9082474..9082618 | 9..153 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:35:58 has no hits.
FMO09434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:05 Download gff for
FMO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11778-RB | 32..1178 | 1..1148 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:41 Download gff for
FMO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CNT1-RB | 74..1220 | 1..1148 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:19 Download gff for
FMO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CNT1-RB | 74..1220 | 1..1148 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:19 Download gff for
FMO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9082468..9082618 | 1..153 | 97 | -> | Plus |
| 2R | 9082670..9082985 | 154..469 | 100 | -> | Plus |
| 2R | 9083212..9083891 | 470..1148 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:41 Download gff for
FMO09434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4969973..4970123 | 1..153 | 97 | -> | Plus |
| arm_2R | 4970175..4970490 | 154..469 | 100 | -> | Plus |
| arm_2R | 4970717..4971396 | 470..1148 | 98 | | Plus |
