FMO09435.5prime Sequence
1119 bp (1031 high quality bases) assembled on 2010-10-13
> FMO09435.5prime
CAGTCGACATGCAAAAGTCTATAACCTCCTTCTTCAAGAAGAAATCCGAT
GCCACCGACAGCCCCTCGCCGCCCAAGAAAGTTCCTAAGATTGATGCGAA
GACCGAACTCCCAGATGAACCCCACATCAAGAGCGAAAGTGCCTCCCCGG
AAACTAAGCCCAAGGTAGAACCTATGTCTGTGGATTCCGAGGAGAAGACA
AGTCCGGTGAAAAATGTTAAGAAGGAACCAAAGGAAGTCGATGACAAGAC
CACTGACAAGAAGGTCACAACCATAGGTCTCAACTCCACTGCCGCTACTA
AGGAGGATGTGGAAAACTACGATCCATCCGCCGACTCCTATCATCCGCTC
AAGAATGCCTACTGGAAGGACAAAAAGGTCACTCCCTACTTGGCACTGGC
CCGCACATTTCAAGTAATCGAGGAGACCAAAGGCCGGCTCAAGATGATCG
ACACGCTGAGCAACTTCTTCTGCTCTGTGATGCTGGTCAGTCCGGAGGAT
CTTGTGCCCAGCGTCTACCTCAGCATCAACCAACTGGCGCCCGCCTACGA
GGGACTGGAGCTGGGCGTTGCCGAGACCACCTTGATGAAGGCCATTTGCA
AGGCAACGGGGCGTAATTTGGCTCACATTAAATCGCAGACGCAGCTAACC
GGGGATCTGGGCATCGTGGCCGAGCAGTCGCGCGTTTCACAGCGCATGAT
GTTCCAGCCAGCGCCTCTGAATGTGAGGGATGTGTTCCGGAAGCTACGCG
AAATAGCCAAGCTATCCGGTCAGTCGAAAATGGACCTGGTGTACAATATG
TTTGTGGCCTGTCGATCGTCGGAGGCTCGCTTCTTTATCCGTTCATTGAT
TGGCAAGCTAAGAATTGGCATTGCAGAGCAGAGTTTGCTCACAGCGCTGG
CCATTGGTTTGGTGAAAAAGACCACATCGATGATTGCAAGGCTAGCAAGG
TGCGGATGTGTATAGGATGAAATAGTCGACACCACTTGCTGTTGAAAACT
GCATACTGTCAGTTGTCCCACTACGATATCATTATAACCGGCCATTCTAA
AGTACGAAATTAGGACTGCAGACGCCTGCCCCAATGCATCCGGCATGCCG
CTGAGGCCATGTCGGCCCA
FMO09435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNA-ligI-RA | 2386 | CG5602-RA | 85..1190 | 9..1108 | 5195 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23891139..23891771 | 380..1008 | 2965 | 99.4 | Plus |
| 2R | 25286936 | 2R | 23890788..23891078 | 89..379 | 1455 | 100 | Plus |
| 2R | 25286936 | 2R | 23890670..23890733 | 26..89 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:36:02 has no hits.
FMO09435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:06 Download gff for
FMO09435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5602-RA | 53..1175 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:37:44 Download gff for
FMO09435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNA-ligI-RA | 79..1201 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:21 Download gff for
FMO09435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNA-ligI-RA | 79..1201 | 1..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:21 Download gff for
FMO09435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23890670..23890732 | 26..88 | 100 | -> | Plus |
| 2R | 23890788..23891078 | 89..379 | 100 | -> | Plus |
| 2R | 23891139..23891771 | 380..1008 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:37:44 Download gff for
FMO09435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19778193..19778255 | 26..88 | 100 | -> | Plus |
| arm_2R | 19778311..19778601 | 89..379 | 100 | -> | Plus |
| arm_2R | 19778662..19779294 | 380..1008 | 99 | -> | Plus |
