FMO09438.5prime Sequence
1112 bp (1008 high quality bases) assembled on 2010-10-13
> FMO09438.5prime
CAGTCGACATGACGCTTGGTGATGTACGAGTTGAGAACAAAATACAAACA
AGAAGTGAAACCTGTGCTATCAATGGAATGGCTTTAGACAACAAGAATGG
AATCATAAAACAGAATGACGCAACCATTTCGTTCTTACGTGCTGCTCGCA
GCGGAGACATTAAAAAGGTGATGGATTTTTTGGACTGTGGAGAAATATCA
GACATAAATAGCTGCAATGCAAACGGTCTTAATGCACTTCATTTAGCTGC
AAAGGACGGATATGTGGACATATGCTGCGAGTTGCTAAGAAGGGGCATAA
AGATCGATAATGCCACAAAAAAGGGAAACACAGCCTTGCACATTGCGTCT
TTGGCGGGGCAGCATGATGTCATCAATCAGCTAATTTTATATAATGCTAA
TGTGAACGTGCAGTCTCTTAATGGTTTCACCCCGCTTTATATGGCAGCAC
AAGAAAACCACGACAATTGTTGTCGAACCCTATTGGCCAATGGGGCAAAT
CCGTCATTATCTACAGAAGATGGCTTCACACCACTTGCGGTAGCAATGCA
GCAGGGACACGACAAAATTGTAGCTGTCTTACTTGAAAATGACGTGCGTG
GGAAGGTTCGCCTACCAGCTCTTCATATTGCTGCGAAAAAAAATGATGTA
AATGCAGCTAAGTTATTACTTCAACATGATCCCAATGCTGACATCGTTTC
CAAATCAGGATTCACCCCTTTGCACATAGCAGCTCATTATGGGAACGTGG
ACATTGCCACTTTGCTTTTGAACAACAAAGCAGATGTAAACTATGTAGCC
AAACATAACATAACTCCCTTACATGTGGCATGTAAATGGGGAAAGTTATC
ACTTTGCACTTTATTACTGTGCCGAGGAGCAAAAATAGATGCGGCGACTC
GTGATGGTCTTACACCACTTCACTGTGCGTCTCGCTCCGGTCATGTAGAA
GTTATTAAGCATTTGTTGCAGCAAACCGCGCCGATACTGACAAAAACGAG
ATGGTCTGTCTGCGCTCCCACATGGCTGCACAGGTGAGCACGACGAGCAG
CTCATTTTATTGTGGACAACAAGGCTCCAGTAAATGAAGTTACTGTGGAT
ACTTAACAGCCT
FMO09438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ank-RE | 5777 | CG1651-RE | 69..1174 | 9..1110 | 5310 | 99.1 | Plus |
| Ank-RD | 5291 | CG1651-RD | 217..1322 | 9..1110 | 5310 | 99.1 | Plus |
| Ank-RC | 5176 | CG1651-RC | 102..1207 | 9..1110 | 5310 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 122530..123422 | 1110..222 | 4100 | 98.5 | Minus |
| 4 | 1348131 | 4 | 123785..123895 | 221..111 | 555 | 100 | Minus |
| 4 | 1348131 | 4 | 129322..129426 | 113..9 | 525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:36:55 has no hits.
FMO09438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:15 Download gff for
FMO09438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank-RC | 42..1148 | 9..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:11 Download gff for
FMO09438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank-RC | 102..1208 | 9..1112 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:44 Download gff for
FMO09438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ank-RC | 102..1208 | 9..1112 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:44 Download gff for
FMO09438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 122527..123422 | 222..1112 | 98 | <- | Minus |
| 4 | 123785..123892 | 114..221 | 100 | <- | Minus |
| 4 | 129322..129426 | 9..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:11 Download gff for
FMO09438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 149948..150052 | 9..113 | 100 | | Minus |
| arm_4 | 143153..144048 | 222..1112 | 98 | <- | Minus |
| arm_4 | 144411..144518 | 114..221 | 100 | <- | Minus |
