FMO09439.5prime Sequence
1109 bp (1027 high quality bases) assembled on 2010-10-13
> FMO09439.5prime
CAGTCGACATGGATTTAACAGATCCATTATTAATTACAAAGTCTCAGCAA
GTCAACAGCCAAGAAGTTGATTTTCAGAAAAAAACTGAGGATACATTTCC
TTCAAAGTTTCATAAAAATAAAGCTAGTTGTGGACTTTTGGCTGTTAATG
AAAGTCGCTGTACAGACCATCAATTACAATGTGAAAACAATATCGTGGGG
TTGTCATTAGAAACTCAAATTGCAGAAAATTCTTCAATAAATGTTTCGAG
AGAACTTAAACCTCACGATCACACTTTTCCGAAAGATAAACAAACTTTTA
AACAAATATCAGATGAATTAAGGAAGTCATATGAAAATATTAATAAAGTT
CAGAATATTAAAAAATCCCAGTCTGTAGAAAATTTTGAAAAATGTTCTGA
AATAAATTTAGCCAATAAATGTTTATATACAAATTTAAATACAAGTCCTA
AGGAAAGAAATGCCTTGGATAAGCAAGCAATGTTTATTAAATTTCATTCT
CTGGAATTGTGCACTGATAAAGTATGTAGTCTACACATACATGAAAACTT
TTGTACTGATATCCATAAATGCGTAGTCGATTCCGAATCGAATAAGCCAA
ACAAAATGAAAAAGTGCTTAGATTATGAAAGCGTTAAAAGGTATCCTTGT
AAAGTTTCTAATGAACCACCTCAACATAATACGGCATCAAAACCTCAAAT
CTTATATGAGACTCGTCCTATCTACCCGAATGTACCGTATAGCCCTTATA
GTACTCCTTTCAGTAGTCCTCGATCTAGTCGACGGAAACCAGCTTTTCGG
GAGTCTAGAAGGATATCGATTGATAAATCTGGAAGTTTTCTTCAGTTAAA
CCAATATAGACTAATGGAACAAATTGGGACATGATCCTACGGACTCGTTA
AATTGGCTTACTCCGAAGAGATTCCACTCATTATGCAATGAAATTCTTTC
AAAAACGTCTCCTGCGTCAGCTGGTCTATGCGGCGAGGACCTCGAAGCAC
ATCACCTCTAGATCGAGTTACAGAAGAAATAGCAGTTAAGGAACTGATCA
TTCAACGTCGTAAGGTGTAGATGCTGGATGACCACTGAAGATCCTTAATA
ATGGTTTGA
FMO09439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17698-RF | 2560 | CG17698-RF | 277..1396 | 9..1107 | 4940 | 97.1 | Plus |
| CG17698-RE | 2326 | CG17698-RE | 277..1396 | 9..1107 | 4940 | 97.1 | Plus |
| CG17698-RD | 2506 | CG17698-RD | 277..1396 | 9..1107 | 4940 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23740212..23741080 | 9..877 | 4345 | 100 | Plus |
| 3L | 28110227 | 3L | 23746191..23746354 | 883..1037 | 365 | 91.5 | Plus |
Blast to na_te.dros performed 2014-11-26 14:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord | 7404 | accord ACCORD 7404bp | 3447..3546 | 240..337 | 117 | 59 | Plus |
FMO09439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:15 Download gff for
FMO09439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RB | 279..1390 | 9..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:14 Download gff for
FMO09439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RD | 277..1388 | 9..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:46 Download gff for
FMO09439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17698-RD | 277..1388 | 9..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:46 Download gff for
FMO09439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23740212..23741084 | 9..881 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:14 Download gff for
FMO09439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23733312..23734184 | 9..881 | 99 | -> | Plus |
