FMO09442.5prime Sequence
1101 bp (983 high quality bases) assembled on 2010-10-13
> FMO09442.5prime
CAGTCGACATGGCCATCAACTTTTCGGCTTCCTTTGCGGCTTGCATAGCA
GCCGGGCTAAAGGTGCCGCGCCAGATAATGTACTGCATCACTCAGGACAC
GGGCCAGCCATACGTGCTCTATAAGGACTCGCAGGACGCTGAACGGAACC
CCGGTGCCATAGGTGCCACTCCCGCCCAGTGGGGCAGCGAGATGTACCCC
AACATCCAGCAACAGGCCCAGCAGCACCTAACTGCCCAGCAGCAGCAACA
GCAGCAGCAGCAGAACGCGGCGCAAGCAGCGGCCCAGGCGGCAGCTGTGG
CAGCGGCAGCGGGACAGCCGCAAAGTCCGCCGGGTGGCGGACAGGAGGCC
CGCGACAACGGCAGCGGTGATGGCCGCCAGCAGCAGGTGTCGCCCTCCTC
GAGTCCGTACCCTTCGGTCCAGCAGCAGCAGAGGGCAAACGGGGCAGGCG
ACGAGGACCCCATGAACCACCAGCTCGCCAACCAGCAGAACCCCGCTCCC
AATCAAAACCAAAGCAGCAATGACCCCCAGCATTCGGGCTCCAACGCGGG
CGAATCAGGCAACCCGCATGTCCAGCAGAACGGCGGACCGCAAAATGACC
CCGGCAACAGTTTTCGAACACCGGACTATTATGACCCCCGCCACGCGGCA
CCGCAAGGGGGGATGCTGGCACCGCCTGGCTTCCCACCGCTTCACTATCT
TAACAAGGGCGTTTTGCCAATGGAACAGTCTGGCGGCGGCGGCGGGGCCG
GGGGTGGAGAAGCCTACGCGCTTCCCGAAATGCTGCCGGCTCAGCAAAAC
GGTCAGCAGAACGCCGGTCCAGCGAACACCAATGCCAACGAATGCGGTGC
GGGAGCCAACGGGAGCGGAGGTGTAGGCGGTGCGACGGAGCGAGCGTGGA
GTGGGATCGTGGCGTGACGAGCGGCGGAAGACGGGCAACGGACCAGGACG
CCCGCCACAGAACAAGCCACACAGCGACCTGCCGCTCTTCAAGTGCCTCA
CCTGCGCAGGACTTCAAGCAGAAGAGCACGTGCTGCAGCACGACCGCATC
CCACCGACGCACGACCCTCCCGTGCTCGAGGTGGCGCCAACGCTTCGCAG
C
FMO09442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jim-RE | 12379 | CG11352-RE | 1223..2301 | 9..1077 | 5025 | 98.4 | Plus |
| jim-RI | 6193 | CG11352-RI | 1880..2958 | 9..1077 | 5025 | 98.4 | Plus |
| jim-RH | 5620 | CG11352-RH | 1223..2301 | 9..1077 | 5025 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22800181..22800787 | 1068..471 | 2520 | 97 | Minus |
| 3L | 28110227 | 3L | 22800850..22801314 | 473..9 | 2310 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:37:08 has no hits.
FMO09442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:17 Download gff for
FMO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jim-RD | 347..1442 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:20 Download gff for
FMO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jim-RH | 1218..2313 | 1..1090 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:52 Download gff for
FMO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jim-RH | 1218..2313 | 1..1090 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:52 Download gff for
FMO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22800183..22800784 | 474..1066 | 97 | <- | Minus |
| 3L | 22800850..22801319 | 1..473 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:20 Download gff for
FMO09442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22793283..22793884 | 474..1066 | 97 | <- | Minus |
| arm_3L | 22793950..22794419 | 1..473 | 99 | | Minus |
