FMO09443.5prime Sequence
1135 bp (1031 high quality bases) assembled on 2010-10-13
> FMO09443.5prime
CAGTCGACATGCTGCGCCAGAACCTGTTGGATCAGCTTAAGCACTTCATA
GAGACGGTGAGCAATGGGCACAGTTGTCCGCAGCTGCTGACCAGCCCCAA
TCTCATCAAGCTCGCACTGGGATTCCTGGAGGAGCTGCCCGCCACGCGAG
ACATTGTGTTCGAATACTTCGCCCTGCTGGCCGAAATCAGTGTGCAGCTG
TATGTGTCGCCGGAGATGGCCGACCCAAAGACCGGTATGCCGGTATCCCA
GGTGAAGCTGGCCGGGAATCGCCAGCAGCAGCAACGTGCTCCGGAATACG
AGGCTTTCAATCTGGTAAAGACCGCGCTGCAGAGTCTGGTGTGGAAGGGA
CCGCCCGCCTGGTCGCCGCTCATCGCCAACTGGAGTCTGGAACTGGTGGC
CAAGCTGTCCGATAAGTACACCCAGCGGCGGATGACCATCACGGCCAGCT
GCAACTATTGGCTGGAGTGCAGCGCCATGCACGGGCTGATGACCCTTATA
AATAGTTGTTTCCGGAAGTTAACCCAACCGGAGGAGGAGGCCTGCGTGGA
GATCATGCTCAATGCCTTTCACCGGTTTCCCATGACCTTCGACTGGATTG
TGGCGAGATTGGGCGGCTGTTTCCCTTACAAGATCATCATGCAGATTCTA
CAGTGCGGCATCAAGCGATTCGTCGATGACTACCGCTGCCACCTGGACTC
GGAGGCGGGCATCCTCGATTATATGACCTCGTGCCACGAACAGCACCTGA
GGGCCGCCTTTCGTGAGATGCTTAGGGAGGGATTCGCACCGAAGAAGCCG
CTGGACGTGGCCGTCGTTCCTTTCCTGCTGATCACCACCAACTACTCGGA
CACGATCCTGCAGAGCTTGGTCAATGTGCTAGTCGAAATCTATACCGAGG
ACATGTGCGAGTGATAGTGCAGAACGCGCCGTTGTGCTGAGCAACAAATG
TTTGCCGGTATGCAGCCCACGCTGATATGCCGTGCTGCGCTGAACGAAGC
GTGGAGCGACGTTGCTCCTTACGGCAGCCAAATGGCCGACAGTATGTTTG
TGCCAGATTTCCTGGACAATTCGATGCAGGACTGAACAGTGGGTGCTCAC
CACGGACTTCCGTGCTGCCGATTGCCTAGAGAACC
FMO09443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| omd-RC | 3186 | CG9591-RC | 59..1160 | 9..1099 | 5055 | 98 | Plus |
| omd-RB | 3334 | CG9591-RB | 59..1160 | 9..1099 | 5055 | 98 | Plus |
| omd-RA | 3350 | CG9591-RA | 223..1324 | 9..1099 | 5055 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13682187..13682962 | 891..116 | 3790 | 99.2 | Minus |
| 3R | 32079331 | 3R | 13683027..13683133 | 115..9 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 13681913..13682131 | 1099..892 | 435 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:37:12 has no hits.
FMO09443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:18 Download gff for
FMO09443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| omd-RA | 216..1347 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:21 Download gff for
FMO09443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| omd-RA | 216..1347 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:55 Download gff for
FMO09443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| omd-RA | 216..1347 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:55 Download gff for
FMO09443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13682187..13682962 | 116..891 | 99 | <- | Minus |
| 3R | 13683027..13683140 | 1..115 | 96 | | Minus |
| 3R | 13681890..13682131 | 892..1117 | 91 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:21 Download gff for
FMO09443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9507612..9507853 | 892..1117 | 91 | <- | Minus |
| arm_3R | 9507909..9508684 | 116..891 | 99 | <- | Minus |
| arm_3R | 9508749..9508862 | 1..115 | 96 | | Minus |
