FMO09444.5prime Sequence
1121 bp (969 high quality bases) assembled on 2010-10-13
> FMO09444.5prime
CAGTCGACATGGGTAAAATTCCGGCCATCGGCATCGACTTGGGCACCACC
TACTCCTGTGTGGGAGTTTGGCAGAACAGCAAGGTGGAGATCATCGCCAA
CGATCAGGGAAACCGCACCACGCCCTCCTATGTGGCATTCAACGAGACGG
AGCGCTTGATTGGCGATCCGGCCAAGAACCAGGTGGCCATGAATGCCAAG
AACACGGTTTTCGATGCCAAGCGATTGATTGGACGGAAGTTCGACGACAA
GAAGATACAGGAGGACCTGAAGCTCTGGCCCTTCAAGGTCATCAATGAGA
AGGGAAAGCCGAAGATCGAGGTGGAGTTCAAGGGCGAACGGAAGCGATTT
GCCCCCGAGGAGATCAGTTCGATGGTGCTGACCAAGATGCGCGAAATCGC
CGAGGTCTATCTGGGTGGCAAGGTGAAGGACGCGGTGGTCACAGTGCCGG
CCTACTTCAATGATAGCCAGCGTCAGGCGACCAAGGATGCGGGCTCCATT
GCTGGACTGAATGTGCTGAGGATCATCAATGAGCCCACTGCGGCAGCTCT
GGCCTATGGGCTGGATAAGAATCTTAAGGGAGAGCGTAATGTGCTCATCT
TCGACTTGGGCGGCGGCACCTTCGACGTCTCCGTACTGAGCATCGATGAG
GGTTCCCTGTTCGAGGTGAAGGCCACGGCCGGCGATACCCATTTGGGTGG
TGAGGATTTCGACAACCGGTTGGTAAATCATTTTGCCGAGGAATTCAAGC
GGAAGCACAAGTCGGACATCAAGGGAAATGCCAGAGCGCTGAGACGCCTG
AGAACGGCTTGTGAACGGGCGAAGAGGACGTTGTCCTCCAGCACGGAGGC
ATCCTTGGAGATTGATGCCCTGCACGAGGGCATTGACTTTTACTCGAAAT
TTCGAGAGCGCGTTTCGAGGAGCTGACATGGACCTCTTCTGTCCACCATG
CAGCCCGTGAGCGGCACTGAGCGATGCCCAGATGGACAAGAAGCCATTCA
TGATGTGGTCTGGTGGGCCGCTTCACGCGTATTCCCAGATTCGAACTACT
GCAAGATCTGTTTGTGCCAGCAGCTAATCTTCAATCATTCCGAGTGAGGC
GTGGCCTATGGAGGCCGGCGT
FMO09444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsc70-2-RA | 2174 | CG7756-RA | 197..1316 | 9..1113 | 5000 | 97.4 | Plus |
Hsp68-RA | 2231 | CG5436-RA | 213..1087 | 24..898 | 1300 | 77 | Plus |
Hsc70-4-RG | 2336 | CG4264-RG | 112..831 | 39..761 | 1115 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13045581..13046476 | 179..1064 | 3880 | 97.9 | Plus |
3R | 32079331 | 3R | 11955435..11956290 | 872..17 | 1370 | 77.3 | Minus |
3R | 32079331 | 3R | 11958788..11959643 | 17..872 | 1370 | 77.3 | Plus |
3R | 32079331 | 3R | 24056224..24057098 | 898..24 | 1300 | 76.6 | Minus |
3R | 32079331 | 3R | 12466814..12467558 | 761..17 | 1250 | 77.9 | Minus |
3R | 32079331 | 3R | 12502751..12503495 | 17..761 | 1250 | 77.9 | Plus |
3R | 32079331 | 3R | 12506034..12506778 | 17..761 | 1250 | 77.9 | Plus |
3R | 32079331 | 3R | 12509317..12510061 | 17..761 | 1250 | 77.9 | Plus |
3R | 32079331 | 3R | 15244390..15245109 | 39..761 | 1090 | 77 | Plus |
3R | 32079331 | 3R | 13044955..13045131 | 9..185 | 870 | 99.4 | Plus |
3L | 28110227 | 3L | 13975916..13976424 | 213..724 | 605 | 75 | Plus |
3L | 28110227 | 3L | 13974607..13974768 | 45..206 | 420 | 84 | Plus |
X | 23542271 | X | 11803808..11804430 | 712..87 | 400 | 73.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:37:16 has no hits.
FMO09444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:18 Download gff for
FMO09444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-2-RA | 189..1289 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:22 Download gff for
FMO09444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-2-RA | 189..1289 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:56 Download gff for
FMO09444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsc70-2-RA | 189..1289 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:56 Download gff for
FMO09444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13044947..13045128 | 1..182 | 97 | -> | Plus |
3R | 13045585..13046503 | 183..1087 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:22 Download gff for
FMO09444.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8870669..8870850 | 1..182 | 97 | -> | Plus |
arm_3R | 8871307..8872225 | 183..1087 | 97 | | Plus |