Clone FMO09445 Report

Search the DGRC for FMO09445

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:94
Well:45
Vector:pMK33-CFH-BD
Associated Gene/TranscriptACXC-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09445.5prime Sequence

1135 bp (1030 high quality bases) assembled on 2010-10-13

> FMO09445.5prime
CAGTCGACATGAGTTTTCCCAGAACTAACAGCAGGAAATCGCCGTTAAAA
AGAAAGCGACTTAGACCATGTCATCTTGACTATGCTAACGAACGCCTATG
GGAACACAGTTACTTGAGGGAAAAATGCAAGGAGCTAAATTTGGAGGAGG
AGTATAGGTACTACCAGGTCCGTCTGATGGTCAGCAACCTCACAATTTTT
TACGTATTGTTTATAATTCTGGCCATGAGCTTTTTGACAATCGAGTTGCT
TTACGTACAGCACTATAACGCCGTATTCTTTAACTTCGTTATCAGAGTAG
TAAGCACTATCCTGGTTTTAACCGTGTTGAGCATCAATTTTTGCGAAAAA
TTTGTCAGTCGCCACCGATGGGTCATGATAGCCAGCTCAGTGCTATCGGT
ATATCTAGTGGTACTCACAGATATTGTTATGATCTCGTATCACTTTTACA
AGAACGACTGGCCCCTTAATACCTCATTCGATGTCTTCACACTCTGCATG
ATCTACATGTTCCTGCCAATTCCCTCGATCAAGGGAGCTGCCCTTTTGGC
ATCCTCAGTCAGTCTTATATATGTGGCCTTTTTTATGCACTCGCTCACTT
TCAACGCGGTGTACACTGATCGCGATAGTTTCGGCTACGATGTGATATCC
ACTGATATATTACACAACCTGGGTTTTAACATGATGGGCATCTTTTTCCG
CATTATGAACGACACCATGGTGCGCGCATCCTTCTTGGACCGCCATCAGT
TCATCATGGAGGAGACTTGGTTGCGTCATGCCTTGCTACAGGATCGATAC
TCTTGGACAGCATACTACCGCCTCAAATTGCGAAACCCGTTCAGAAAAAT
CAGAGCAAATAACCCAGTCCGAGAACAGCCCCGACCGCTTTCAATGGTCC
GCGAACGACAGAATCCTTCATGGCCATACAAATTCATCCTGATGTCTCTA
TCCTGTATGCAGACGTGTGAACTACACTCACTGACACGACATGACCGTGG
GAAACCTGTGAAGTCCTGCACGACCTCTACGCAGATCGATATCGCTGCCT
CAACTTTAAGTGCAGGCATCAGTCTGGGAATTGCTACTACTGGTGTGGCG
GGTTGACTACTCGATCCGAATCACGCCAATTTGCG

FMO09445.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
ACXC-RB 3564 CG5983-RB 59..1201 8..1126 5025 97.3 Plus
ACXC-RA 3505 CG5983-RA 59..1201 8..1126 5025 97.3 Plus
ACXA-RG 3567 CG17176-RG 463..1128 457..1104 370 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12913164..12913812 418..1051 2520 97.2 Plus
2L 23513712 2L 12912942..12913104 258..420 815 100 Plus
2L 23513712 2L 12912747..12912888 119..260 710 100 Plus
2L 23513712 2L 12912588..12912700 8..120 565 100 Plus
2L 23513712 2L 12917497..12917605 457..565 290 84.4 Plus
2L 23513712 2L 12921810..12922123 457..770 265 72.3 Plus
2L 23513712 2L 12917697..12917805 657..765 215 79.8 Plus
2L 23513712 2L 12926750..12926813 920..982 210 92.2 Plus
2L 23513712 2L 12926522..12926610 687..775 190 80.9 Plus
Blast to na_te.dros performed on 2014-11-26 14:37:20 has no hits.

FMO09445.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:19 Download gff for FMO09445.5prime
Subject Subject Range Query Range Percent Splice Strand
ACXC-RB 54..1201 1..1126 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:24 Download gff for FMO09445.5prime
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 54..1201 1..1126 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:57 Download gff for FMO09445.5prime
Subject Subject Range Query Range Percent Splice Strand
ACXC-RA 54..1201 1..1126 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:57 Download gff for FMO09445.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12912583..12912699 1..119 96 -> Plus
2L 12912748..12912888 120..260 100 -> Plus
2L 12912945..12913104 261..420 100 -> Plus
2L 12913167..12913896 421..1126 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:24 Download gff for FMO09445.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12912748..12912888 120..260 100 -> Plus
arm_2L 12912945..12913104 261..420 100 -> Plus
arm_2L 12912583..12912699 1..119 96 -> Plus
arm_2L 12913167..12913896 421..1126 95   Plus