FMO09445.5prime Sequence
1135 bp (1030 high quality bases) assembled on 2010-10-13
> FMO09445.5prime
CAGTCGACATGAGTTTTCCCAGAACTAACAGCAGGAAATCGCCGTTAAAA
AGAAAGCGACTTAGACCATGTCATCTTGACTATGCTAACGAACGCCTATG
GGAACACAGTTACTTGAGGGAAAAATGCAAGGAGCTAAATTTGGAGGAGG
AGTATAGGTACTACCAGGTCCGTCTGATGGTCAGCAACCTCACAATTTTT
TACGTATTGTTTATAATTCTGGCCATGAGCTTTTTGACAATCGAGTTGCT
TTACGTACAGCACTATAACGCCGTATTCTTTAACTTCGTTATCAGAGTAG
TAAGCACTATCCTGGTTTTAACCGTGTTGAGCATCAATTTTTGCGAAAAA
TTTGTCAGTCGCCACCGATGGGTCATGATAGCCAGCTCAGTGCTATCGGT
ATATCTAGTGGTACTCACAGATATTGTTATGATCTCGTATCACTTTTACA
AGAACGACTGGCCCCTTAATACCTCATTCGATGTCTTCACACTCTGCATG
ATCTACATGTTCCTGCCAATTCCCTCGATCAAGGGAGCTGCCCTTTTGGC
ATCCTCAGTCAGTCTTATATATGTGGCCTTTTTTATGCACTCGCTCACTT
TCAACGCGGTGTACACTGATCGCGATAGTTTCGGCTACGATGTGATATCC
ACTGATATATTACACAACCTGGGTTTTAACATGATGGGCATCTTTTTCCG
CATTATGAACGACACCATGGTGCGCGCATCCTTCTTGGACCGCCATCAGT
TCATCATGGAGGAGACTTGGTTGCGTCATGCCTTGCTACAGGATCGATAC
TCTTGGACAGCATACTACCGCCTCAAATTGCGAAACCCGTTCAGAAAAAT
CAGAGCAAATAACCCAGTCCGAGAACAGCCCCGACCGCTTTCAATGGTCC
GCGAACGACAGAATCCTTCATGGCCATACAAATTCATCCTGATGTCTCTA
TCCTGTATGCAGACGTGTGAACTACACTCACTGACACGACATGACCGTGG
GAAACCTGTGAAGTCCTGCACGACCTCTACGCAGATCGATATCGCTGCCT
CAACTTTAAGTGCAGGCATCAGTCTGGGAATTGCTACTACTGGTGTGGCG
GGTTGACTACTCGATCCGAATCACGCCAATTTGCG
FMO09445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ACXC-RB | 3564 | CG5983-RB | 59..1201 | 8..1126 | 5025 | 97.3 | Plus |
ACXC-RA | 3505 | CG5983-RA | 59..1201 | 8..1126 | 5025 | 97.3 | Plus |
ACXA-RG | 3567 | CG17176-RG | 463..1128 | 457..1104 | 370 | 73 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12913164..12913812 | 418..1051 | 2520 | 97.2 | Plus |
2L | 23513712 | 2L | 12912942..12913104 | 258..420 | 815 | 100 | Plus |
2L | 23513712 | 2L | 12912747..12912888 | 119..260 | 710 | 100 | Plus |
2L | 23513712 | 2L | 12912588..12912700 | 8..120 | 565 | 100 | Plus |
2L | 23513712 | 2L | 12917497..12917605 | 457..565 | 290 | 84.4 | Plus |
2L | 23513712 | 2L | 12921810..12922123 | 457..770 | 265 | 72.3 | Plus |
2L | 23513712 | 2L | 12917697..12917805 | 657..765 | 215 | 79.8 | Plus |
2L | 23513712 | 2L | 12926750..12926813 | 920..982 | 210 | 92.2 | Plus |
2L | 23513712 | 2L | 12926522..12926610 | 687..775 | 190 | 80.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:37:20 has no hits.
FMO09445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:19 Download gff for
FMO09445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ACXC-RB | 54..1201 | 1..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:24 Download gff for
FMO09445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ACXC-RA | 54..1201 | 1..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:57 Download gff for
FMO09445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ACXC-RA | 54..1201 | 1..1126 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:57 Download gff for
FMO09445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12912583..12912699 | 1..119 | 96 | -> | Plus |
2L | 12912748..12912888 | 120..260 | 100 | -> | Plus |
2L | 12912945..12913104 | 261..420 | 100 | -> | Plus |
2L | 12913167..12913896 | 421..1126 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:24 Download gff for
FMO09445.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12912748..12912888 | 120..260 | 100 | -> | Plus |
arm_2L | 12912945..12913104 | 261..420 | 100 | -> | Plus |
arm_2L | 12912583..12912699 | 1..119 | 96 | -> | Plus |
arm_2L | 12913167..12913896 | 421..1126 | 95 | | Plus |