FMO09446.5prime Sequence
1141 bp (1019 high quality bases) assembled on 2010-10-13
> FMO09446.5prime
CAGTCGACATGACTATGGAGGATCGCAATCGCATCTGGACCACGGGCAAC
ATTAACCATGGCTTCTTTGGCGACAATCTGCAGCAGCAGCCGTTGCCCCT
GCAGAGATTGCAGACACCAGGTAACCTCAGCCTTCTTTCGGCACCGATTC
GAGCCAATGGCAGTGGCAATGGAAACGCAACTGCCAATGGACATGGACAG
AATTCGGCCACGGAGAGTGCGAATGGAAAGCAGCTGCCATACGAGCCCAT
ATCCCCAAACCTAATTGGCATACAATCCAAGTTTCGTCGGAGTTATTACC
ACAAAGTGGTGCTTGGCGGACTGCTGGCCCTTGTAATTATTCTGCTGATA
GCAATCATAGTCATAAGCCTAGGCCTTAAGAAATCCAGCTCAATTTGCCG
TAGCAAGGAGTGCCTCCGCACAGCGGCCAGCCTCATCTATGCGATGGACG
AGCAGACTGATCCCTGCGAGGACTTTTACCAATTCACCTGCGGCAGGTGG
GCCAACGAGCATCCGCGTCCGGATTCGGTGACCTCGAACGATTGGTTCCG
GGAGCGTCAGGCGCACATAATGCGTGTGGTCCGCGAGTTCCTCCGCTCGA
ATATTACCAAATCGGAACCAGAAGCAGTGGGCAAGGCAAAGACTATGTAC
AGAGCCTGCATGGATACGAAGCTGCTGGATAAGCGTGATCTGGAGCCGCT
GATAAACTATCTGCTGCGTTTTGGACTACCCGTTCTGCCCTCCGCCTTGA
ATCTCACCCTGGGAAGTGGTTCCAAATATGCCACAGAGGCAGCCAATGTC
AAATACAACTGGCTGCAGTCCATTGTTTCCATTAAACAACACCTCACCAT
GGACCTCATCATAGGATTCGATGTCTTTCCGGATCCTTTCAACCGCACCA
TCAACCGCATTGCCCTGGGAACTCCAGAGACTGATTCGGCGTTTCCTTTC
ACACGACGACTCCCACAAAATGCCTCCGTAGATCCATCGCAGACCATTTT
TATGCAAAACAGCGATGATGAGACGACGCGAGATGACCGGGAAGCGAGAG
GAGGAGCAGCAGCGACTAGCCACGGTATGACGGCTATCTGCATACGTCCG
AGTGATCGAAAAGTTCCTGCCTCCTCACGTTGAATCCGAAT
FMO09446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nep5-RF | 3946 | CG6265-RF | 806..1931 | 6..1114 | 5025 | 97.4 | Plus |
| Nep5-RE | 3470 | CG6265-RE | 385..1510 | 6..1114 | 5025 | 97.4 | Plus |
| Nep5-RD | 3366 | CG6265-RD | 385..1510 | 6..1114 | 5025 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27060603..27061176 | 949..376 | 2795 | 99.1 | Minus |
| 3R | 32079331 | 3R | 27061397..27061561 | 282..118 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 27063277..27063394 | 123..6 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 27061241..27061335 | 375..281 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 27060465..27060535 | 1022..953 | 215 | 90.1 | Minus |
Blast to na_te.dros performed 2014-11-26 14:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 1770..1801 | 991..1022 | 115 | 84.4 | Plus |
FMO09446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:12 Download gff for
FMO09446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep5-RC | 382..1523 | 1..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:06 Download gff for
FMO09446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep5-RC | 382..1523 | 1..1130 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:40 Download gff for
FMO09446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nep5-RD | 382..1523 | 1..1130 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:40 Download gff for
FMO09446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27061399..27061558 | 121..280 | 100 | <- | Minus |
| 3R | 27063280..27063397 | 1..120 | 98 | | Minus |
| 3R | 27060603..27061176 | 376..949 | 99 | <- | Minus |
| 3R | 27061241..27061335 | 281..375 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:06 Download gff for
FMO09446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22887121..22887280 | 121..280 | 100 | <- | Minus |
| arm_3R | 22889002..22889119 | 1..120 | 98 | | Minus |
| arm_3R | 22886325..22886898 | 376..949 | 99 | <- | Minus |
| arm_3R | 22886963..22887057 | 281..375 | 100 | <- | Minus |
