FMO09448.5prime Sequence
1101 bp (1032 high quality bases) assembled on 2010-10-13
> FMO09448.5prime
CAGTCGACATGAGTCGTAATCAAAACGAAAGCAACCTCCTTGATATCAAT
GAAGATCTGCCTTTTGCTCTTGCTCTGCCCCCCGTCTCAATGGATTCGTT
GCAGCTGAACGCAGACGGCAATAGCCCCGAGGACAAGACGCTCGGTATTG
GCCGTAAAACCATTTTGAATGCGCACACAAAATCTTTGGCTCCCATTGTG
AGTGACGAGGCCCTGAACACGCTAAATGAGCTCCGCGAGCAAAATCTTCT
CTGCGACGCCCAGATTTCTGTGGGGGAGGATGTGTTCAATGTACATCGTG
CAATAATGTGTTCATGTAGCTCATACTTTCGAGCTCAATTCACAGGGTTT
AACGCTGACACTCCCGGATGTGTAGATGGGTCAGATGCAAAAAAAAACAA
TAATTTTATTCATATCCCCGGCGTGAGTTCATGTATAATGAACTGTGTAA
TACAGTACGCTTACCTGCGTCAAACAAACATCTCCGAGAGCAATGTTCAT
GAGTTACTTATCTGCGCTGACTACGTTGGCATGGTAGGTTTAGTTAAGAA
ATGTAAAGACTACCTCGGTCGCATACTCACCCCCGAAAACTGTGTCAGTA
TTATGGGATTCGCACGGTTCCGATTTTTGGAGGACCTTCACCTGAAGGCC
AGGAACTACACTCTAAGGTACTTTACTGAAGTTGCATATCGTAATATTGA
CATACTAGATATGTCAGCTGAAGACTTTTACAGTATTATTAGCGATGATG
AGTTAAATACCCGCGAAGAGGATCACGTATGGAAATTGTGTGTTAAATGG
ATCGACCGTAATCCAGAAAGCCGCAAGCGCCATGTTGCCCATCTAATGAC
TGGGGTACGACTGGGCCTAATGACTCCAAAGTGCTTCATGGAAGAGGTTA
ACGAACACCCATACGTCTTAGAATGTGAAGCCGCTAAGCCACTGATCGTT
GACACCTTTAAATTTATGTACGACCTGACTTTTTGAATCCTCAGCAGACG
AGCTTACCACTCCACCACTGCATGCAGCTACCGCACGTAGTCATCTTTGC
ATAAGGCGGCTTGGGAGCGGGTGTCAACCCTCAAAAGGGTGCCATCTCGA
G
FMO09448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:36:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klhl10-RB | 2779 | CG12423-RB | 156..1241 | 9..1092 | 5065 | 98.3 | Plus |
| klhl10-RA | 2706 | CG12423-RA | 181..1266 | 9..1092 | 5065 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U | 3151297 | U | 143312..143634 | 9..331 | 1600 | 99.7 | Plus |
| U | 3151297 | U | 143686..143973 | 331..618 | 1440 | 100 | Plus |
| U | 3151297 | U | 144025..144290 | 616..881 | 1330 | 100 | Plus |
| U | 3151297 | U | 170084..170199 | 880..994 | 515 | 98.3 | Plus |
| U | 3151297 | U | 793592..793707 | 994..880 | 515 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:36:52 has no hits.
FMO09448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:14 Download gff for
FMO09448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12423-RB | 150..1224 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:38:09 Download gff for
FMO09448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klhl10-RA | 175..1249 | 1..1073 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:43 Download gff for
FMO09448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klhl10-RA | 175..1249 | 1..1073 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:43 Download gff for
FMO09448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U | 170086..170208 | 882..1002 | 97 | -> | Plus |
| U | 143306..143634 | 1..331 | 98 | -> | Plus |
| U | 143687..143971 | 332..616 | 100 | -> | Plus |
| U | 144026..144290 | 617..881 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:38:09 Download gff for
FMO09448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArmU | 1937072..1937194 | 882..1002 | 97 | -> | Plus |
| ArmU | 1910292..1910620 | 1..331 | 98 | -> | Plus |
| ArmU | 1910673..1910957 | 332..616 | 100 | -> | Plus |
| ArmU | 1911012..1911276 | 617..881 | 100 | -> | Plus |
