FMO09453.5prime Sequence
1102 bp (999 high quality bases) assembled on 2010-10-13
> FMO09453.5prime
CAGTCGACATGTTTTCGGCGGTGAAGCCGCTCTCCAAGTATCTCCAGTTC
AAGTCAATACGCATCTACGATTCCGTCTTCACCATCCACTCCAGGTGCAC
CGTCGTCATCCTGCTCACCTGCTCGCTTCTCCTGTCCGCGCGTCAGTACT
TTGGGGATCCGATCCAGTGCATCAGCGAGGAGAAGAACATCGAGTACATA
CAGTCCTACTGCTGGACCATGGGCACCTACATCCTCAAGCTGGACGACTT
CGGCGATCAGGAGCAGGCGCTGGTTTCCCCAAATCAGGAAGTCTCCTACA
ACTCTGCCTTCTTCTCATCCGCCACAACCAACGCACCGCAGTCATCGTCG
AGGGTCCGCACCAGGCCCCACTTCAGATCGAGTCTGCGCAGGATTGGCGA
GTACAACGAGGCCTACGCGCGGTCCCTGTCGATAGCCGAGGGCGTGGGCC
CCGAGATTCGTGGCCAGACGGAGCGGCAGTATCTGCGCTACTACCAGTGG
GTCATCATCCTGCTGCTCTTCCAGTCGTTCGTCTTCTACTTCCCCTCGTG
CCTGTGGAAGGTGTGGGAGGGCCGGCGGCTTAAGCAGCTCTGCTCGGAGG
TCGGCGACGCGCTCCTCTCGGAGGAGACCTACAATACCCGGCTGCGCATG
CTGGTCAAGTACTTCACCACCGACTACGAGGACATGCACTTTTGCTACAT
GGCCAAGTACGTCTTCTGCGAGGTCCTCAATTTCCTCATCAGTGTGGTGA
ACATAATCGTGTTGGAAGTGTTCCTGAACGGATTCTGGTCGAAGTATCTG
CGCGCGCTGGCCACCATTCCGTTCTACGACTGGGATCGCTGGAACCGCGT
GTCCTCGAGCGTCTTCCCGAAGATCGCCAAGTGCGAGTGCTCAAGTTCGG
GGGCAGCGGCACGGCGAACGTTATGGACAACCTGTGCATCTTGCCGCTGA
CATTCTGAACGAGAAATCTTCGTCTTCCCTTTGGGCGTGATTCCTGCTTC
ATGACCTGATGTCCGGTTGACCTCTGTGCGCTGCCATGATTGCAGCAGTA
TCTTCGAAGCAATGATCGCAGCAGGTTGCGTTTCATGACTACCGCATGTA
AG
FMO09453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inx5-RB | 1814 | CG7537-RB | 340..1433 | 9..1089 | 4975 | 97.9 | Plus |
| Inx6-RA | 1875 | CG17063-RA | 621..1182 | 414..972 | 620 | 74.6 | Plus |
| Inx6-RA | 1875 | CG17063-RA | 285..496 | 24..235 | 325 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19169807..19170544 | 746..9 | 3690 | 100 | Minus |
| X | 23542271 | X | 19169240..19169516 | 1018..744 | 1085 | 96 | Minus |
| X | 23542271 | X | 20268817..20269149 | 746..414 | 480 | 76.3 | Minus |
| X | 23542271 | X | 20269274..20269485 | 235..24 | 325 | 76.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:39:56 has no hits.
FMO09453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:43 Download gff for
FMO09453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| inx5-RB | 91..1128 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:45 Download gff for
FMO09453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx5-RB | 332..1369 | 1..1034 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:13 Download gff for
FMO09453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inx5-RB | 332..1369 | 1..1034 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:13 Download gff for
FMO09453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19169222..19169516 | 744..1034 | 95 | <- | Minus |
| X | 19169810..19170552 | 1..743 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:45 Download gff for
FMO09453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19063255..19063549 | 744..1034 | 95 | <- | Minus |
| arm_X | 19063843..19064585 | 1..743 | 99 | | Minus |
