FMO09455.5prime Sequence
1110 bp (1011 high quality bases) assembled on 2010-10-13
> FMO09455.5prime
CAGTCGACATGTTTCTGCCCGTGAAATCCAATCATTCCGGCGAGGCGAGT
GGCAACAACGAAGATGTCACCACCACCAGCAACAATTCCACACAGACGCC
CAGCGATCTGAGCCCACCGGGACCCAATGAAGAGGTACTGCCCCAGGCGC
ATCACCAGAATCCGGGCCACTGCATCGCCTCCTTTGCAGCCATCAACCAG
ATGAGGAACAATGCGCAGCTATGCGATGTGCGCCTGGAAGTGGGCGGCGA
CACCATCAATGCCCATCGAGTGGTTCTGGCCTCCGTATCGCCCTATTTCT
ATGCGATGTTCAACGACGACATGCTGGAGCGCACTCAGGGATTAGTTCGG
CTGCATGACGTGGACAGCTCGGCGCTGCGGCAGCTGATCGATTACACCTA
CACCGGCGAGATCACGATCACCGAGCAGAACGTACAGGTGCTGCTGCCCG
CGTCCGGACTACTGCAGATGCACTCGGTGCGGGATGCCTGCTGTAAGTTC
CTGCTGCGCCAGCTGCATCCCTCCAACTGCTTGGGCATACGCAGCTTCGC
AGATGCCCACTCCTGCAAGGAGCTGCACACGCGGTCGCATAAGTACGCCC
TGCAGAACTTCCAGCAGGTTGTGGGTACCGAGGAGTTCCTGCTGCTGCCG
TTCGAGGAGGTTCGCGAGCTGATCTCCAACAGCCAGCTGAACATCAGCTC
CGAGGAGCGAGTCTTTGCCGCCGTCATCAATTGGGTGAAACATGATCTGC
CCACACGAAGACTCCACATTGCCGAGTTGATGTCAAACGTCAGACTGCCG
CTGGTGAGCAGGGATTTCCTCATGAGCTGCGTGGAAACGGAGACCCTCAT
GCGCGATGACTCCGAGTGCAAGGAGCTGCTGCTGGAAGCCATGAAGTACC
ATTTGCTTCCGGAGCAGCGCAGCATAATGGCAGCCAGCGAACCCAGGAGC
GTCGTTCGGAGGGCATGAAACCCTACGTATTTGCGGTGGGGAGGAGGCAG
TCTCTTCGCATTCACACGAGTGCGAGGTGTACATCCGCGCCTCTACTCTT
TGAGTCAGTGGCACCAATGTTGTGGCGACGATCTCGATCGGAGATAAATT
CCTGCCAAGC
FMO09455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15097-RE | 3029 | CG15097-RE | 397..1511 | 2..1110 | 5110 | 97.9 | Plus |
| CG15097-RD | 3029 | CG15097-RD | 397..1511 | 2..1110 | 5110 | 97.9 | Plus |
| CG15097-RC | 3029 | CG15097-RC | 397..1511 | 2..1110 | 5110 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18823792..18824570 | 1089..315 | 3405 | 97.6 | Minus |
| 2R | 25286936 | 2R | 18825497..18825680 | 218..35 | 920 | 100 | Minus |
| 2R | 25286936 | 2R | 18824704..18824803 | 315..216 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:40:03 has no hits.
FMO09455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:44 Download gff for
FMO09455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RB | 4..1119 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:50 Download gff for
FMO09455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RC | 396..1511 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:18 Download gff for
FMO09455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15097-RC | 396..1511 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:18 Download gff for
FMO09455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18823769..18824569 | 316..1110 | 97 | <- | Minus |
| 2R | 18824704..18824800 | 219..315 | 100 | <- | Minus |
| 2R | 18825497..18825680 | 35..218 | 100 | <- | Minus |
| 2R | 18826019..18826051 | 1..34 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:50 Download gff for
FMO09455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14711274..14712074 | 316..1110 | 97 | <- | Minus |
| arm_2R | 14712209..14712305 | 219..315 | 100 | <- | Minus |
| arm_2R | 14713002..14713185 | 35..218 | 100 | <- | Minus |
| arm_2R | 14713524..14713556 | 1..34 | 91 | | Minus |
