FMO09459.5prime Sequence
1131 bp (1034 high quality bases) assembled on 2010-10-13
> FMO09459.5prime
CAGTCGACATGGAACAGGCCGAATTGGGCAGTACGTGCCTTGCAGCGCCT
AAGCGCCGCTTCCCGGACAACGAACGTTGTGGGCGGGAGCTGGCCGCCGT
GCCCGTGCAGCCAGTGCTGCCACAAATCCCTACCGAGGAGGAGCCGGAGA
TAAAACAGCGCAAAAGGGAGAAGGAGCATAAGGAATCCCTCGACCGGGAA
ACGGAGTGCAACCTCATGGACTTCTGTGATGAGCTGCTCTTCGAGATCTT
CCAGTACCTGGACACGTCCTCCATTCTGGCGGTGATGCATTGCTCGCCGC
GCTTTGAAAACCTCCTGCTGGATCACCGCTTCTATCATCACATAGACTTA
AGCAACGGGCCCCTGCCTATGGGCATCCTAGAAGAGATTCTTGGACGAGC
CACCGAAAAGACACACACCATTAAAATCTGCGGACCTCCGTCCTCGCAGC
ATGTTGCAGGCGAATTCCGCCAGTTCACCCAAACGCTAAGCTCCGTTTTC
CCCAGGGTTGTACAGCTTAAAGTGCTGGAGCTGGAGGGCGTCAGCCTGGA
CTTCGAATACATACACATAACTGAGTTCCCGGCCACTCTGAGGCGTCTGA
AGCTAAAGGACTGTAGCGTTAGGGTCGGCGACACGCCAAAAAGCATATTT
TACTCCATAGAGCTGCATCTGCTTGATCTAGAGGATCTCAGTATTGAGGA
CAACAGCTGGTTCGAGCCCTATTATATTATGGGCCTGTCGAAGTTACCTT
CCTTGCGGCGTCTTAGTCTTAAGGGCTGTCAGCGCTATGCAAGTTTGTGC
CCTATGGCAGCATGGCGGCACGTTTCGGTTTCCAAAACTAGAGTCACTAG
ATCTTCGCCAGACGCCCATCAACAACTCAGATCTGCAGTGTTTTAGCGCT
ATCGAGAATCTCAAGGAACTGCTGCTTGAGTCGCCACAGATCCTGCACTC
CAAACAAGCCGTTGCTAAAAAAAATACCACGGCAACGCCACTGACGAAGC
TGCTTCCCCGCAGCCTGATCCACTGAAAGTGCTTAGCGATGACGAGCCGT
CCACATCGCGGGCGCCATGGAGCATCCTGGCGGGCATGCAAGGTTGCCGG
TTCAATTGGACACACTGCCAAGCGCGATTGA
FMO09459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5003-RA | 2491 | CG5003-RA | 88..1198 | 8..1118 | 5310 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27916148..27916429 | 289..8 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 27915792..27916062 | 560..290 | 1355 | 100 | Minus |
| 3R | 32079331 | 3R | 27915089..27915344 | 1097..842 | 1080 | 97.3 | Minus |
| 3R | 32079331 | 3R | 27915403..27915559 | 837..682 | 735 | 99.4 | Minus |
| 3R | 32079331 | 3R | 27915610..27915733 | 684..561 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:39:33 has no hits.
FMO09459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:40 Download gff for
FMO09459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5003-RA | 90..1209 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:33 Download gff for
FMO09459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5003-RA | 90..1209 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:04 Download gff for
FMO09459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5003-RA | 79..1198 | 1..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:04 Download gff for
FMO09459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27915070..27915342 | 844..1118 | 96 | <- | Minus |
| 3R | 27915396..27915557 | 684..843 | 98 | <- | Minus |
| 3R | 27915611..27915733 | 561..683 | 100 | <- | Minus |
| 3R | 27915792..27916062 | 290..560 | 100 | <- | Minus |
| 3R | 27916148..27916433 | 1..289 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:33 Download gff for
FMO09459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23740792..23741064 | 844..1118 | 96 | <- | Minus |
| arm_3R | 23741118..23741279 | 684..843 | 98 | <- | Minus |
| arm_3R | 23741333..23741455 | 561..683 | 100 | <- | Minus |
| arm_3R | 23741514..23741784 | 290..560 | 100 | <- | Minus |
| arm_3R | 23741870..23742155 | 1..289 | 98 | | Minus |
