FMO09460.5prime Sequence
1104 bp (995 high quality bases) assembled on 2010-10-13
> FMO09460.5prime
CAGTCGACATGGCAGCCAACAACGGTAACAAATTCTCAATGGAGCACGAT
TCCGAGGGTTGTGATGAGGTGGACTTTATAGTGGCCACGCACAACAATAA
CAACGATTACGAGGATTTGGGCAGCGTGAGTCAGGCGGTGATCAACACCA
AAGTAGCTGCAGCAGCAGCAACCGCAGCAGCAGCAACACCAAACAACGAA
CCAAACAGCAATACATTGAAAAAAGCCAAGGAGCGTCGCACCCTCTTCCA
TTTCGGAAGCAATAAGAAGCTGAGTCAGAGCAAGTCACAGGAGAGCCAGG
AGGCGGGCAGCAAGGATGCTACGCCGGCGACAACTGCTGCTCCATTGCCG
CCGGTGCCAATCGGTACGCCACCGCGACAGCACAAGTTCGTGAAGAGCAA
CAGCTTGGCCAGATTGCTGGGCAACACCTACAATGCCAAGAAGTTTGAGA
AGCAGGAGCAAAAGCGTCTGGCCTCCGGATCCGAGGGCGGCAAATTCAAC
ACCTACAGTGGAAGGCGTGGCCGTGCGGGTCCCTATTTGGAGCGATTCAA
GCGGGTGTCCAAGGAGGACGGCGATGTGGCTGGCGAGGATGACACGGTGA
GGGTCACGAACGTCATAACCCTGACGACGGACTCGCGGGACTTGCTCTAC
GGCAGCCGGCAGGAGCATGTGGGTCGCACTGGGGGCTATGACCAGAACGA
TCAGCTCACCTCGAAGCGTATCGCACGCTCACCCGCAGCTTGGGCAAACT
CTGGAGGCGCACACACAGCGTGGACATTAGCACACCCGATCCGGAGTTCA
AGGTCTCGTACCTGGGCAACGTCCTGACCGGTTGGGCCAAGGCAGGTGAG
GGTTGTGTGGAGAATCAGCTGATACGCTGTGGCGGACTACACCCAGCACT
CAAGCCGGACGTGATCATGCGCCTGAAGTGTTGCGCCTCCGGCTTGAAGG
CCACCACCCGGCAGCCACGGACTCACGGAGTACTGGGCCCATAGGATCAC
CTTACTGTTGCCGCACGAAGACCTATTCCGCGGGTTCTTCGGCTGGATCT
ACCGCCACGAAGGGCAGGAAGCTGGATCCACGAACCTCCGCTGTCATGTG
CGGG
FMO09460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:39:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8312-RA | 4099 | CG8312-RA | 1004..2090 | 9..1098 | 5000 | 98 | Plus |
| CG8312-RD | 3414 | CG8312-RD | 322..1405 | 9..1098 | 4945 | 97.7 | Plus |
| CG8312-RC | 3476 | CG8312-RC | 384..1467 | 9..1098 | 4945 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9621583..9622417 | 9..842 | 4125 | 99.9 | Plus |
| 3R | 32079331 | 3R | 9622469..9622699 | 842..1074 | 630 | 92.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:39:37 has no hits.
FMO09460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:40 Download gff for
FMO09460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8312-RA | 992..2083 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:35 Download gff for
FMO09460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8312-RA | 994..2085 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:05 Download gff for
FMO09460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8312-RA | 994..2085 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:05 Download gff for
FMO09460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9621573..9622417 | 1..842 | 99 | -> | Plus |
| 3R | 9622470..9622707 | 843..1083 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:35 Download gff for
FMO09460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5447295..5448139 | 1..842 | 99 | -> | Plus |
| arm_3R | 5448192..5448429 | 843..1083 | 92 | | Plus |
