FMO09461.5prime Sequence
1122 bp (1000 high quality bases) assembled on 2010-10-13
> FMO09461.5prime
CAGTCGACATGTCGCGCAAAATGTTGCAAGTGCCGGTAGCAACACTTGTG
TTGCTGTCGCTGCTGCCGATTGCCCATGTTGCTGCTGCCTCAGCCACTGC
CGCAGATGCAACAGCAGCAACTGCAGCATCCACAACGTCAACCGGAATCG
ATGCCAGCCTGAAGAATGCCAAGCTGATTGAGGCCAAAGTGCTGCCCGAC
TTGGCCATCCTGCAACGCGTTAACCAGGAAGACGAAAAGTGGCAGCAGGT
CTACCGGTTCATCGACGATGGCTTTCCCGTCCTCGAGTTGTACGGCTACA
AGCCGCTACCAGACCTGCCGTACACGTTGATTGTGCCCAAAATCGATGTG
CGGAGCATTGAGAAGCCGCGACTGAAGGAGTTCATGTTGGAACATGTGGT
GCCTGGGAAAATCTTCGACAGCTACAATGGTAATGGGAACAGCAAGGAGG
AGGAGGAGTCCTTCGGCAATGGGAACGGACACAAAATCGTTTTCCGTAAA
TTGGAAAAATCCCACAACAATGTTTGGCTACTCAATGGCCAGCAAATACT
CCACAAGCTGCGTATCAATGAGAACCTGATGGCCATTGCAATTGATGGTT
ATTTGGGCGATAGGAAGTCGCCCTACTCCAAGCGCAATATCCAGGAAACG
AACAACCGCTACAACGACCCTCAGCCGCTGGAGCAGCCGAACATTACGAA
TGCACATGCAAAGGTGGAGCCCGTTATCAAGGAGTCGAAGGCCAGTCCGC
TGATGTCCTTTTTGGCAAACATGAAGACCGGCACCAAAGGTCTTCCAGCA
CTTCCTCTCCAAGAGCAATCTGACCCGCATCATGGACGACACGCGTATAC
GTTGCTGATTCCGTCGGACAACGCCTTCCAGCGCTGGCATCCCATCGACT
GGGGATTCTATCCGTTTTCCGTGCCGAATTCACTGAGTCGTGCTTAAAAA
CCATTTCCTGCTCATGCAGCGACCCTTGCGCTGGCCGATGTTCGAACATG
ACGAGTCGTCTGACCACCATGGGTGGCGAGGATGTCGTCTTCACGCACCC
ACCTCACGGGAAATATGTGAGCATTATGTCGAACTACACACCTCTCATGC
CAATCAGGTTCATTATCCTCGA
FMO09461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5758-RF | 3127 | CG5758-RF | 332..1456 | 9..1117 | 5015 | 97.3 | Plus |
| CG5758-RE | 3262 | CG5758-RE | 467..1591 | 9..1117 | 5015 | 97.3 | Plus |
| CG5758-RD | 3193 | CG5758-RD | 398..1522 | 9..1117 | 5015 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18126494..18126839 | 310..655 | 1730 | 100 | Plus |
| 2L | 23513712 | 2L | 18123605..18123908 | 9..312 | 1520 | 100 | Plus |
| 2L | 23513712 | 2L | 18127466..18127859 | 656..1042 | 1465 | 96.7 | Plus |
Blast to na_te.dros performed 2014-11-26 14:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2429 | 91..172 | 136 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2842 | 85..162 | 135 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6871 | 81..172 | 132 | 61.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1157 | 81..142 | 130 | 67.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1145 | 81..142 | 130 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2896 | 85..199 | 126 | 61 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3282..3371 | 100..188 | 123 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6831 | 91..146 | 118 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2359 | 93..146 | 117 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2381 | 91..147 | 114 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6444..6568 | 19..144 | 114 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6901 | 85..141 | 114 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6785 | 81..142 | 112 | 64.5 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8012 | 91..158 | 110 | 65.7 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9456 | 91..158 | 110 | 65.7 | Plus |
FMO09461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:48 Download gff for
FMO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5758-RC | 296..1402 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:58 Download gff for
FMO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5758-RD | 391..1497 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:26 Download gff for
FMO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5758-RD | 391..1497 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:26 Download gff for
FMO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18123598..18123908 | 1..312 | 99 | -> | Plus |
| 2L | 18126497..18126839 | 313..655 | 100 | -> | Plus |
| 2L | 18127466..18127863 | 656..1045 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:58 Download gff for
FMO09461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18123598..18123908 | 1..312 | 99 | -> | Plus |
| arm_2L | 18126497..18126839 | 313..655 | 100 | -> | Plus |
| arm_2L | 18127466..18127863 | 656..1045 | 96 | -> | Plus |
