FMO09463.5prime Sequence
1120 bp (998 high quality bases) assembled on 2010-10-13
> FMO09463.5prime
CAGTCGACATGGAAACTAATGTGAATCCCCTGGCCGTAATCCTGGTTTAC
TTCGATAGCAAGGGGGATCGGTTACTGTACAGGTATCCGTACCAGACTCT
CGGCCAAACGGAGGTGGCCAACGACGAGCAGCGGAAGTCCAGAAAGCGCA
ATCCCTATGCCGTGGCCAATACGGACGATCTGCTGCAGACACCCACCCAC
TTGGGTGCTGCCAAGAGCCAAGGACAACTGCAGGGATTCGCAGATGAGGT
CCTGTCCGCTCTGTTTGCTGTTAAACCACAGCTATGCAACCAAAAGTTTG
AACTCAAACTGAACGACGTACGCTTTGTCAGTCATCCCACTCTGATACCG
CAAAAGGAGCAGAGAAGTGGTCCAATGGCCAAGCAACAGATGCTCATCAA
CATTGTTTTTGCGCTGCATGCACAGGCCAGCTACTCGATTGTTAAGTGCT
ACCACGAACTGAGCAAGCGCCTTGGACTGGCGCTGAAGTTCGAGGAGCAG
CGCAGTGGCTATCTCACCGAGCAGACGGCTCAAATGGCTCGCACACACGA
CGAGCAGCAGCAACAGCCGCTGGAACGCACACTGGAGCTGATTGCAGAGC
GCTGCAGCTTGGCACAGGCCTTGCGCTCCATCTTCCATGATCTATGCACC
ACTGGACTGCTGAGTACCTCGCTGAATCACAACCTAACGTTGTGCTTCTG
TCTGCCCGCTAAGGCACACCAGCTCCATAAGAAGGGCAGCATGGTGGATC
CAGAGACCATAGATCGGTGCCTTCGTGCACTGAAGCCCTATCATGGCATG
TTGCTGCTGGTCGACTTTGCCGAATTGTTGGACTGCGTTCCACCGACTGG
GGCACGCATGCTATGGCAGCTAGTCGACGTCTACGACCCACTGATCAGTC
TGCAGAGCATGTCCTCCAATGCAGACTTGAGTTTCGAGCATGTTTATAAG
CTCGTCTTCGCATTTGGTCTACTGGCTAAGCACTTATTATTTATCCACTC
TGCGAGAACAATTGTCTATTGTGATCGCGCCCGGAATGCACATGCCACCA
AGTCCCACCTGGTGGAGAAGTCCTCGCCGGTTTGCGATGTCGCTGTTCCA
AGGAATCTCGAATTTCATTG
FMO09463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8783-RC | 2226 | CG8783-RC | 38..1133 | 8..1098 | 5060 | 98.1 | Plus |
| CG8783-RA | 2380 | CG8783-RA | 192..1287 | 8..1098 | 5060 | 98.1 | Plus |
| CG8783-RB | 2297 | CG8783-RB | 109..1204 | 8..1098 | 5060 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14000500..14001436 | 1076..140 | 4190 | 97.9 | Minus |
| 3L | 28110227 | 3L | 14001493..14001627 | 142..8 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:40:33 has no hits.
FMO09463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:48 Download gff for
FMO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8783-RA | 184..1298 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:00 Download gff for
FMO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8783-RB | 101..1215 | 1..1109 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:27 Download gff for
FMO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8783-RB | 101..1215 | 1..1109 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:27 Download gff for
FMO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14000462..14001433 | 143..1109 | 97 | <- | Minus |
| 3L | 14001493..14001631 | 1..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:00 Download gff for
FMO09463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13993562..13994533 | 143..1109 | 97 | <- | Minus |
| arm_3L | 13994593..13994731 | 1..142 | 97 | | Minus |
