FMO09467.5prime Sequence
1132 bp (1023 high quality bases) assembled on 2010-10-13
> FMO09467.5prime
CAGTCGACATGGAACAGCAGCAATCAAAAAATAATGCTCACGTCTCAAAG
TTGTTCATTTGTACGGCTGTTGATTGCAAAGATGATATTGAGGAGAAATT
CGAGCGTTCGTTTGTCACTCTGCAGATGCAAATTTCTGGCCTTAGTGACA
AAGAGATGCATGATATGTTGTCACAAGCTGTGTGTAAAGAAAAACAGCAT
GAAGAAATATCAATCGGCTTTCTCTACATAATGCTTACCGACCCTTCTAT
GGCTTCCAAAACATATCGGGACGTTACTCTCGTATCTAGAGACGGAATGA
ATGGCATTGTCACAAATCTCACGTTTCTGGTCGCTGAGAAATATACAAAG
CTCACGGAGGTAGCGAGAAGGCAATTAATTTGGTTGTTACGGGAATTCGT
AAAGCACCAGGTTCTAAGTGTTGAAAATGTTATATGGAACTGTTTGCGTC
AGGCTGGCGGAGGAGATGTTTCCTCCAGAAACCTTTTTCTTATCGAGAGC
CTTTTGGACATATTCATCGAATTTAGAACGTGGTTGGAAACCAACCCATT
TCTCGTTCAGTCTACAGTTTACAGCTTCGTACGCCTAATAGAAGATCACG
CTAACCCTGCTCTCTTGTCGCTTCGGCAGAAAGAAGTGAAGTTTACGATA
TCATTGATCCGAGAAAGGTTCCATGATATTATACCTCTAGGAAGAGATTT
TGTACGCCTCCTACAAAACGTAGCTCGAATTCCTGAGTTTGAACAACTGT
GGCGGGATATTCTTTTCAATCCTAAAATGTTGCATCAAACTTTTAACGGA
ATTTGGCAACTACTGCATATACGGACAAGTCGAAAGTTTCTGCAATGCCG
TCTGCTGCCTGAGATGGAACGAAAAATAAGCTTCTTAGCATCTTCTGTTA
AGTTTGGAAATCAGAAGAGATACCAAGATTGGTTTCAGGACAAATACTTT
GCTACACCTGAGTCTCATAGCTGCGATTCTGATCTAATTCGATTTATCAT
AAATGTCATCATCCCACAAACGATATATGTTTGTGCCTCTTGATATTTAT
ACCGCGATGGGCCAATCATAAGGTGGCTCACTCTCGTCTGCACCAATTCC
AATCGCCTTCTGCTAATGCAAAGGTGTCATTG
FMO09467.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS3-RA | 3382 | CG17665-RA | 88..1203 | 9..1132 | 5235 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4242089..4242701 | 706..94 | 3065 | 100 | Minus |
| 2R | 25286936 | 2R | 4238836..4239157 | 1026..706 | 1470 | 97.8 | Minus |
| 2R | 25286936 | 2R | 4242761..4242847 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:40:39 has no hits.
FMO09467.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:49 Download gff for
FMO09467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17665-RA | 93..1208 | 9..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:03 Download gff for
FMO09467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 88..1203 | 9..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:30 Download gff for
FMO09467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS3-RA | 88..1203 | 9..1132 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:30 Download gff for
FMO09467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4238739..4239156 | 707..1132 | 95 | <- | Minus |
| 2R | 4242089..4242699 | 96..706 | 100 | <- | Minus |
| 2R | 4242761..4242847 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:03 Download gff for
FMO09467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 126244..126661 | 707..1132 | 95 | <- | Minus |
| arm_2R | 129594..130204 | 96..706 | 100 | <- | Minus |
| arm_2R | 130266..130352 | 9..95 | 100 | | Minus |
