FMO09468.5prime Sequence
1132 bp (1037 high quality bases) assembled on 2010-10-13
> FMO09468.5prime
CAGTCGACATGAAGCGCAGCCGGTGGAGCCACAGTGGCTCCTCCACGGCT
CGACTCCTGCTGATCGGAGTATTGTTCGCCAGCTGTTCCACCGCCATCCT
GGGTGCCCAGCGTCCCCCCATCAACTCCGCCGGAGGTCACGAACTGCGCG
GAACCACCTTCATGCCGGCCCTGGAGTGCTACGATCCATACGGCAGGCCA
CAGAAATGTCTGCCAGAATTTATCAATGCTGCCTATCAACTGCAAATTGA
GTCAACTAATACCTGTGGTGAGCAGAATGACAACCACTTCTGCATACAAA
CCATGAACCAAAATCACAAAAACTGCGAATTTTGCAAATACAATGATCAT
AATCCATCCTTCTTGACGGATTTGCATGATCCGCAAAGTCCAACGTGGTG
GCAATCGGAGACCATGTTCGAGGGCATTCAGCACCCGAACTATGTGAATC
TGACTTTGCACCTTGGAAAATCCTATGACATCACCTACGTGCGCATTCTC
TTCCGCTCACCAAGACCCGAATCCTTTACGATTTACAAGAGGACCTCGGA
GAGTGGACCCTGGATTCCCTACCAGTTCTACAGTGCCACCTGTCGCGACA
CCTACTCCCTGCCAGATTCGCGAGCCATTCGCAAGGGTGAGGGCGAGGCC
CATGCTCTGTGTACCAGCGAATACAGTGATATCTCGCCGTTGAGGGACGG
TGAGATTGCCTTCTCCACGCTGGAGGGTCGTCCCAGTGGCATCAATTTTG
AGCGCAGCGGAGAACTGCAGGAGTGGGTCACGGCCACGGATATCCGTATC
ACGCTGGACCGACTGAACACCTTCGGTGACGAACTCTTCGGTGATTCCCA
GGTGCTCAAGTCGTACTTCTATGCCATCAGTGACATTGCCGTGGGTGCGC
GTTGCAAGTGCAATGGACATGCCAGCAAGTGTGTACCGAGCACGGGAATG
CATGGCCGAGAGACTCTGGTCTGCAGTGCCGGCACAATACGGATGGAACC
CGATGCGATCGCTGTCTGCCACTCTACACCGAACCTCAAGTGGAAGAGAT
CCACCTCAACGGAGTCACGAGTGCCAGGCCTGGCACTGCATGATGCCGGA
CAATGCTCTCGAACCGAATCTGTTCAATCGGA
FMO09468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LanB2-RB | 5857 | CG3322-RB | 347..1479 | 8..1132 | 5195 | 98 | Plus |
| LanB2-RA | 5762 | CG3322-RA | 252..1384 | 8..1132 | 5195 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9618169..9618768 | 465..1064 | 2755 | 98 | Plus |
| 3L | 28110227 | 3L | 9617246..9617441 | 8..203 | 980 | 100 | Plus |
| 3L | 28110227 | 3L | 9617777..9617912 | 202..337 | 680 | 100 | Plus |
| 3L | 28110227 | 3L | 9617976..9618104 | 338..466 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:40:43 has no hits.
FMO09468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:50 Download gff for
FMO09468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LanB2-RA | 244..1378 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:40:05 Download gff for
FMO09468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LanB2-RA | 249..1383 | 1..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:32 Download gff for
FMO09468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LanB2-RA | 249..1383 | 1..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:32 Download gff for
FMO09468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9617243..9617441 | 1..203 | 98 | -> | Plus |
| 3L | 9617779..9617912 | 204..337 | 100 | -> | Plus |
| 3L | 9617976..9618103 | 338..465 | 100 | -> | Plus |
| 3L | 9618170..9618768 | 466..1064 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:40:05 Download gff for
FMO09468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9610343..9610541 | 1..203 | 98 | -> | Plus |
| arm_3L | 9610879..9611012 | 204..337 | 100 | -> | Plus |
| arm_3L | 9611076..9611203 | 338..465 | 100 | -> | Plus |
| arm_3L | 9611270..9611868 | 466..1064 | 98 | == | Plus |
