FMO09470.5prime Sequence
1137 bp (981 high quality bases) assembled on 2010-10-13
> FMO09470.5prime
CAGTCGACATGCTGAAAACTGTGACAACAGCAATGGCTGCCGGCGATGAC
GATGTCCCAGCGAGCATTTTGGAAATAGAACTGCCAGCCATTTTGCTCAA
CGAGAGCCTCTTCATCGAGCTGAATGGCAATCTCACCCAGCTGGTGGACA
CGACTAGCAATCTCAGCCAAATCGTCTGGAATCGCAGCATAAACGGCAAT
GGAAACAGCAACACTTTCGACCTGGTCGATGACGAACAAGAGCGGGCGGC
GGTCGAGTTTTGGCTACTAGTCAAAATGATCGCCATGGCCGTGGTGCTGG
GACTCATGATACTCGTCACCATCATAGGCAACGTATTCGTAATTGCCGCC
ATTATACTCGAGAGAAACTTGCAGAATGTTGCCAATTATTTGGTTGCATC
TCTGGCAGTGGCTGATTTATTTGTTGCCTGTCTTGTCATGCCGCTTGGCG
CCGTCTACGAGATAAGTAATGGATGGATATTGGGACCGGAACTGTGCGAC
ATTTGGACGTCTTGCGATGTCCTTTGCTGCACAGCATCCATACTGCACCT
GGTGGCCATTGCGGCGGACAGATATTGGACCGTGACCAATATCGACTACA
ACAATCTGCGGACACCGCGACGCGTATTCCTCATGATTTTCTGCGTCTGG
TTTGCGGCGCTGATTGTTTCCTTGGCCCCCCAATTTGGCTGGAAGGATCC
GGATTACATGAAGCGCATCGAGGAGCAGCACTGCATGGTGTCACAGGATG
TGGGCTATCAGATATTTGCCACCTGTTGCACTTTCTATGTGCCGCTGCTG
GTGATTCTGTTTCTTTACTGGAAAATCTACATTATTGCCAGGAAGCGCAT
CCAACGACGCGCCCAGAAGTCATTCATGTCACACTAACCGAGACTGACTG
CGATTCGGCGGTGCGGGAGCTGAAGATGGAGTGCAGCAAGCGACGGGCGG
AGCGCAGCGTCTGGAGGCGGGCGAGCGGACCCATTGACGGCGACGGACTG
GCGGACAGTTGCAGCGACGTACCCGCAAACGGATGGCTATATGTTTTGGC
CGCACCCGACACGCCATGTGGTGGCGGATCCGAGGGCCGGGTGCCAGATC
GATGCCGCCATGCCGTGGATTTCGCCAGTTTGGCCAT
FMO09470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 5-HT1B-RE | 4026 | CG15113-RE | 909..2054 | 5..1137 | 5240 | 97.9 | Plus |
| 5-HT1B-RA | 2980 | CG15113-RA | 909..2054 | 5..1137 | 5240 | 97.9 | Plus |
| 5-HT1B-RD | 3861 | CG15113-RD | 909..1963 | 5..1054 | 5045 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19028614..19028940 | 331..5 | 1620 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19026333..19026526 | 761..568 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 19027167..19027309 | 468..326 | 700 | 99.3 | Minus |
| 2R | 25286936 | 2R | 19025878..19026017 | 898..760 | 650 | 99.3 | Minus |
| 2R | 25286936 | 2R | 19026608..19026719 | 571..460 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 19024739..19024989 | 1137..899 | 535 | 89.2 | Minus |
| 2R | 25286936 | 2R | 19096412..19096500 | 474..562 | 235 | 84.3 | Plus |
| 2R | 25286936 | 2R | 19108813..19108931 | 633..751 | 220 | 79 | Plus |
Blast to na_te.dros performed 2014-11-26 14:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| accord2 | 7650 | accord2 QBERT 7650bp | 4471..4507 | 621..585 | 113 | 78.4 | Minus |
FMO09470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:46 Download gff for
FMO09470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT1B-RB | 34..1183 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:53 Download gff for
FMO09470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT1B-RA | 905..2054 | 1..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:20 Download gff for
FMO09470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 5-HT1B-RA | 905..2054 | 1..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:20 Download gff for
FMO09470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19024739..19024989 | 899..1137 | 91 | <- | Minus |
| 2R | 19025878..19026015 | 762..898 | 99 | <- | Minus |
| 2R | 19026333..19026522 | 572..761 | 100 | <- | Minus |
| 2R | 19026608..19026717 | 462..571 | 100 | <- | Minus |
| 2R | 19027174..19027307 | 328..461 | 100 | <- | Minus |
| 2R | 19028618..19028942 | 1..327 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:53 Download gff for
FMO09470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14914679..14914812 | 328..461 | 100 | <- | Minus |
| arm_2R | 14916123..14916447 | 1..327 | 99 | | Minus |
| arm_2R | 14912244..14912494 | 899..1137 | 91 | <- | Minus |
| arm_2R | 14913383..14913520 | 762..898 | 99 | <- | Minus |
| arm_2R | 14913838..14914027 | 572..761 | 100 | <- | Minus |
| arm_2R | 14914113..14914222 | 462..571 | 100 | <- | Minus |
