FMO09471.5prime Sequence
1129 bp (951 high quality bases) assembled on 2010-10-13
> FMO09471.5prime
CAGTCGACATGGCCGAAGTGGAGAAACCAACGGCGGCCACGCCCCCGACC
GACATCCCCCAGGCCACGGCTGCACCTGCCAGCGAGGCGCCAGTGGCTGT
AACGCCCACAGCGGATACCACCGTGGACGTCGAGCCGGGCACCTCGCCCA
CCCAGGAGCCCAACTCCAATTCGCATCCGCACGACTCCGAGTACGACACG
GCCAGTGATCTGGAGGGCGGAGAGGACTATGACGACGAGGAGAGTGCCAG
CGGCAGCGCCAGTGGCAGTGGGAGCGAGGAGGAATCTGAGACGGACGACG
AGGACGATGAGGTGGGCAGCGAAACGGACGATGGCGAAGGGGAGCAGGCG
ATGGACCGCTCCGTCGCAGACAGTGAGGCCCAGAAGAAGGTGGACGAGGA
TCGCAGCAATCCGCAGTACATCCCAAAGCGGGGCACTTTCTACGAGCACG
ACGATCGGACGGCGGAGACCGAGGGAGAAATCCTGATCGAACCCGAAAAC
GGTGCTGGCCAGGCGGCGGCGGAGCCAAATGGCGAACTCAATGGACTTGC
GGCCGCCGGTGCCACGCCGACTGGCCAAACGCCACAGATCTCACAGGCAT
CGAAGACCATGCGAAAATGGCAACCAGCTTCAGGCGGTGATCGCTGGTCT
CACGATCGATTCGAGGCCACGGAGCAGGCTCTCAAATCCCGTGCAGAGTT
GCTGCAAACATACGGCTACGACATTAGAAACGAGGACGCACCACCCAGAG
CCAGACGTCGCCGGCGATATACGCGTGGGCCTAGTAAATACTCAAGAAAC
TGGGAGGACGAGCAGGCCTACCTCAAGCCAGCAATAAGAGCGCAAGCCGC
CGCGGTCCACAGGACTTCCCGGCGCTCAACGAAGAAGCCACGTGGTCCAC
GATCATCATCCTCGCGTGAGGAAAAGGATAACCGACGGTCCGTCGCTGCT
GAAGGCTTGGTTTCAGAGAGCACAGCCCTTGGCCAGTAGCTCCATCTCCA
CAGATCCCAGAGCGTTGTACGTGAGAGGGAAAGGGAGCGGGACGCGATCG
AAAGCCCAGAATTCGCACCTTCGGGCGGATGAACCGGCGGCTCGGACGTC
GAATTGCATGGAATTAAGAGAACACCGTG
FMO09471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| btz-RD | 3009 | CG12878-RD | 212..1343 | 9..1129 | 5040 | 97.4 | Plus |
| btz-RC | 2671 | CG12878-RC | 141..1272 | 9..1129 | 5040 | 97.4 | Plus |
| btz-RA | 2742 | CG12878-RA | 212..1343 | 9..1129 | 5040 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27700648..27701762 | 9..1115 | 4760 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:40:16 has no hits.
FMO09471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:46 Download gff for
FMO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| btz-RA | 307..1443 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:55 Download gff for
FMO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| btz-RA | 207..1343 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:22 Download gff for
FMO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| btz-RA | 207..1343 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:22 Download gff for
FMO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27700643..27701779 | 1..1129 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:55 Download gff for
FMO09471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23526365..23527501 | 1..1129 | 97 | | Plus |
