FMO09472.5prime Sequence
1117 bp (1028 high quality bases) assembled on 2010-10-13
> FMO09472.5prime
CAGTCGACATGAATGCGTTCCAGGACTTTGAGCTGGGGGCCAAACTATAT
CTGCAGTGCTTATTATCGCTGAGCAGCTCCCGATCTGCCACGCCATCCTA
CACCTCACCTGTTAACCACGCTGGAGCTTCTCCTCTGAATGCCATTGCCC
ATTCGCCGGTGAATGTGTCCGCCACTCATAGGCAGAACTTTTTCACACCC
ATTGCCAACCAGTCGCAGCAGCAACAGCAGCAACAGCCTGTGGCGGTACC
GCTCGACTCCAAGTGGAAAACAACACCCAGTCCGGTGCTCTACAATGCCA
ACAACAACAGCAGCAATAACAACACCAGCAGCAGCAACAACAACAACAAC
AGTAACTGGGAGGTGGGCATTAATAGCAATACTCATGTTGCAGCTACGGC
AGCAGCAACATCAACAGTTGGCGCTCAACCACTGCCGCCGCAAACGACAC
CCGTTTCGCTGGTGATGCACGCCCCACCGCCGCAGCAGCAACCACTGCAG
CAGCAGCACCACCATCACCAACCGCCTCCACCGCCACCTGCTAGTTTGCC
AGCGCCATCGGCACCACCCACCAGCGGCAGCAGCAGCAGCCACAACAGCG
TGGGCCATGCCACCAGCGTTATACGCATTTCGAGCAGCCAACAGCAACAT
CAGCAGCAGCAACAGCACCAACAGCAGGCACATCCACATGTGGTGGTGAG
CGGCGGACAGACTTTTCATCCCGTAATCGTGGACGCTACTCAGCTATCGG
TGCCGCTGCCACCCACAACGGTTCATTTCATCAGCCCAACACGCCCACCT
CAACAGCGGCATCAGTGGCTTCAATGAGCCAGGACAAGATGCTGGCAAAA
AACGGCTACAATGCGCCCTGTTCAAGCTGTTGCCGCATATGACGCCATGA
GCAAGGCGTCGCCAGCTCCGGTCCCTCTGACCCTAACCACATCGGCCAGC
AGTTACAACGTGGTGATGATGCACAGCAGCAGCAGCATCAGCAGCTTTCA
ACAACAGCAGCACTGCAGCAGCAGCAACAGTCGCCACCCCAGAATGCCGC
TGAACACAACAAACAATCATTCTGAATTGTGTTCCGCCCCCTTAAGCTTC
CCCGGCAAGTCATTAAC
FMO09472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cic-RC | 5152 | CG43122-RC | 205..1306 | 8..1109 | 5120 | 98.2 | Plus |
| cic-RB | 6454 | CG43122-RB | 205..1306 | 8..1109 | 5120 | 98.2 | Plus |
| cic-RA | 5167 | CG43122-RA | 205..1306 | 8..1109 | 5120 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20293602..20294394 | 64..855 | 3885 | 99.6 | Plus |
| 3R | 32079331 | 3R | 20294553..20294756 | 854..1055 | 700 | 96.1 | Plus |
| 3R | 32079331 | 3R | 20293448..20293503 | 8..63 | 280 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7079 | 299..666 | 407 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..3050 | 299..1077 | 388 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7197 | 216..676 | 334 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2220..2703 | 175..693 | 325 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2839 | 215..685 | 321 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2862 | 467..1043 | 319 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6421..6923 | 184..669 | 312 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2544 | 477..666 | 301 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2932 | 208..688 | 296 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..7033 | 391..677 | 289 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2640..3040 | 299..694 | 243 | 55.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2539 | 221..449 | 231 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2470 | 550..688 | 227 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6899 | 474..599 | 226 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2631..3012 | 207..596 | 216 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2520 | 393..599 | 208 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6893 | 215..356 | 203 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6923 | 208..344 | 189 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1036..1154 | 295..415 | 186 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6862..7199 | 199..537 | 158 | 55.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1050..1170 | 482..612 | 153 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1175 | 473..597 | 144 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1581 | 483..525 | 134 | 79.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 886..999 | 486..599 | 119 | 61.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8631..8662 | 569..600 | 115 | 84.4 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9087..9226 | 405..540 | 113 | 57.4 | Plus |
FMO09472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:59:47 Download gff for
FMO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cic-RB | 175..1294 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:39:57 Download gff for
FMO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cic-RA | 196..1315 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:37:24 Download gff for
FMO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cic-RA | 196..1315 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:37:24 Download gff for
FMO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20294554..20294816 | 855..1117 | 92 | | Plus |
| 3R | 20293439..20293503 | 1..63 | 93 | -> | Plus |
| 3R | 20293602..20294393 | 64..854 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:39:57 Download gff for
FMO09472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16119161..16119225 | 1..63 | 93 | -> | Plus |
| arm_3R | 16119324..16120115 | 64..854 | 99 | -> | Plus |
| arm_3R | 16120276..16120538 | 855..1117 | 92 | | Plus |
